Gene: AT4G08920
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G08920
- Transcript Identifier AT4G08920.1
- Gene Type Coding gene
- Location Chr4 : 5724260-5726905 : positive
Gene Family Information
- ID HOM05D001432
- #Genes/#Species 439/99
- Phylogenetic origin
- ID ORTHO05D002371
- #Genes/#Species 294/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G08920.1
- symbol CRY1
- Alias ATCRY1,BLU1,BLUE LIGHT UNINHIBITED 1,HY4,ELONGATED HYPOCOTYL 4,OOP2,OUT OF PHASE 2
- uniprot Q43125
Descriptions
- Description cryptochrome 1
- Computational description cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0072387 | IDA, IMP ISS | Gene Ontology | flavin adenine dinucleotide metabolic process | 1 2 |
| GO:1901529 | IMP | Gene Ontology | positive regulation of anion channel activity | 3 |
| GO:0010218 | IMP | Gene Ontology | response to far red light | 4 |
| GO:0010114 | IMP | Gene Ontology | response to red light | 4 |
| GO:0010468 | IMP | Gene Ontology | regulation of gene expression | 5 |
| GO:2000652 | IDA | Gene Ontology | regulation of secondary cell wall biogenesis | 6 |
| GO:0010244 | IMP, IEP | Gene Ontology | response to low fluence blue light stimulus by blue low-fluence system | 7 8 |
| GO:0071000 | IDA, IMP | Gene Ontology | response to magnetism | 9 10 |
| GO:2000377 | IDA | Gene Ontology | regulation of reactive oxygen species metabolic process | 11 |
| GO:0010310 | IDA | Gene Ontology | regulation of hydrogen peroxide metabolic process | 11 |
| GO:0099402 | IMP | Gene Ontology | plant organ development | 12 |
| GO:1902347 | IMP | Gene Ontology | response to strigolactone | 13 |
| GO:0042752 | IMP | Gene Ontology | regulation of circadian rhythm | 14 |
| GO:0009646 | IMP | Gene Ontology | response to absence of light | 15 |
| GO:0010117 | IMP | Gene Ontology | photoprotection | 16 |
| GO:0009644 | IMP | Gene Ontology | response to high light intensity | 16 |
| GO:0009785 | IEA | GOA Database | blue light signaling pathway | |
| GO:0009785 | TAS | Gene Ontology | blue light signaling pathway | 17 |
| GO:0009785 | IEA | InterPro | blue light signaling pathway | |
| GO:0018298 | IEA | GOA Database | protein-chromophore linkage | |
| GO:0050896 | IEA | GOA Database | response to stimulus | |
| GO:0006952 | IEA | GOA Database | defense response | |
| GO:0009416 | IMP | GOA Database | response to light stimulus | |
| GO:0009416 | IDA, IEP | Gene Ontology | response to light stimulus | 1 18 |
| GO:0032922 | IBA | Gene Ontology | circadian regulation of gene expression | 19 |
| GO:0043153 | IBA | Gene Ontology | entrainment of circadian clock by photoperiod | 19 |
| GO:0009640 | IMP | Gene Ontology | photomorphogenesis | 20 |
| GO:0010118 | IMP, IGI | Gene Ontology | stomatal movement | 21 22 |
| GO:0009414 | IGI | Gene Ontology | response to water deprivation | 21 |
| GO:0009638 | IMP | Gene Ontology | phototropism | 23 |
| GO:0046777 | IDA | Gene Ontology | protein autophosphorylation | 24 |
| GO:0051510 | IMP | Gene Ontology | regulation of unidimensional cell growth | 20 |
| GO:0009637 | IDA, IMP NAS | Gene Ontology | response to blue light | 20 25 |
| GO:0007623 | IEP NAS | Gene Ontology | circadian rhythm | 18 |
| GO:1901672 | IMP | Gene Ontology | positive regulation of systemic acquired resistance | 26 |
| GO:1902448 | IMP | Gene Ontology | positive regulation of shade avoidance | 27 |
| GO:0009583 | IMP | Gene Ontology | detection of light stimulus | 28 |
| GO:1901332 | IMP | Gene Ontology | negative regulation of lateral root development | 29 |
| GO:0060918 | IMP | Gene Ontology | auxin transport | 29 |
| GO:1900426 | IMP | Gene Ontology | positive regulation of defense response to bacterium | 26 |
| GO:1901371 | IMP | Gene Ontology | regulation of leaf morphogenesis | 7 |
| GO:0010075 | IGI | Gene Ontology | regulation of meristem growth | 30 |
| GO:0010617 | IMP | Gene Ontology | circadian regulation of calcium ion oscillation | 31 |
| GO:0046283 | IMP | Gene Ontology | anthocyanin-containing compound metabolic process | 32 |
| GO:0010343 | IMP | Gene Ontology | singlet oxygen-mediated programmed cell death | 33 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071949 | IDA IBA | Gene Ontology | FAD binding | 19 34 |
| GO:0009882 | IEA | GOA Database | blue light photoreceptor activity | |
| GO:0009882 | IDA, IMP | Gene Ontology | blue light photoreceptor activity | 6 35 |
| GO:0009882 | IEA | InterPro | blue light photoreceptor activity | |
| GO:0009881 | IEA | GOA Database | photoreceptor activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IDA | Gene Ontology | ATP binding | 24 |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003677 | IBA | Gene Ontology | DNA binding | 19 |
| GO:0042803 | IPI | Gene Ontology | protein homodimerization activity | 36 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 36 |
| GO:0004672 | IDA | Gene Ontology | protein kinase activity | 24 |
| GO:0016301 | IDA | Gene Ontology | kinase activity | 34 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 37 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | HDA | Gene Ontology | cytosol | 38 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA IBA | Gene Ontology | cytoplasm | 19 39 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA, HDA ISM, IBA | Gene Ontology | nucleus | 19 40 41 |
| GO:0016605 | IEA | GOA Database | PML body | |
| GO:0016604 | IDA | Gene Ontology | nuclear body | 25 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002081 | Cryptochrome/DNA photolyase class 1 |
| IPR020978 | Cryptochrome C-terminal |
| IPR036155 | Cryptochrome/photolyase, N-terminal domain superfamily |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR005101 | Cryptochrome/DNA photolyase, FAD-binding domain |
| IPR036134 | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily |
| IPR006050 | DNA photolyase, N-terminal |
| IPR014134 | Cryptochrome, plant |
| Mapman id | Description |
|---|---|
| 26.1.2.1.1 | External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome photoreceptor (CRY) |