Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00690 Vaccinium macrocarpon HOM05D003944 ORTHO05D426535 1.5e-127 459.5 233 100.0
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 9.4e-29 131.3 163 52.8
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.2e-28 131.0 127 59.8
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 3.9e-27 125.9 163 49.7
Sc13g0001110 Simmondsia chinensis HOM05D003944 ORTHO05D005521 5.1e-27 125.6 164 50.0
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 6.7e-27 125.2 163 49.1
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 1.1e-26 124.4 150 50.7
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.1e-26 124.4 163 49.1
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 1.1e-26 124.4 163 48.5
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 1.1e-26 124.4 163 49.7
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 1.5e-26 124.0 163 49.7
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 1.5e-26 124.0 163 49.7
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 1.5e-26 124.0 163 49.1
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 48.5
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 48.5
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 48.5
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 48.5
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 49.1
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 2.0e-26 123.6 163 49.1
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 2.6e-26 123.2 163 47.9
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 2.6e-26 123.2 163 49.1
Nitab4.5_0004224g0030 Nicotiana tabacum HOM05D003944 ORTHO05D005521 2.6e-26 123.2 160 48.8
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 3.3e-26 122.9 163 48.5
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 3.3e-26 122.9 163 48.5
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 3.3e-26 122.9 163 49.1
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 4.4e-26 122.5 163 47.9
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 4.4e-26 122.5 163 47.9
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 4.4e-26 122.5 163 48.5
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 5.7e-26 122.1 163 47.9
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 5.7e-26 122.1 163 48.5
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 7.4e-26 121.7 163 48.5
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 7.4e-26 121.7 163 47.9
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 7.4e-26 121.7 163 47.9
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 9.7e-26 121.3 163 48.5
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 9.7e-26 121.3 163 47.9
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
Cpa.g.sc5.163 Carica papaya HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 48.5
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 1.3e-25 120.9 163 47.9
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 1.7e-25 120.6 163 47.9
CARHR209140 Cardamine hirsuta HOM05D003944 ORTHO05D005521 1.7e-25 120.6 163 47.2
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 1.7e-25 120.6 163 47.2
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 2.2e-25 120.2 163 47.2
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 2.2e-25 120.2 163 48.5
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 2.8e-25 119.8 163 47.2
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 3.7e-25 119.4 160 47.5
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 3.7e-25 119.4 162 47.5
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 3.7e-25 119.4 163 46.6
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 3.7e-25 119.4 163 47.2
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 3.7e-25 119.4 163 47.2
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 4.8e-25 119.0 163 46.6
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 4.8e-25 119.0 163 47.2
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 4.8e-25 119.0 162 47.5
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 4.8e-25 119.0 163 47.2
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 6.3e-25 118.6 163 46.0
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 6.3e-25 118.6 162 46.9
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 6.3e-25 118.6 162 46.9
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 6.3e-25 118.6 163 47.9
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 8.2e-25 118.2 171 46.2
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 8.2e-25 118.2 163 47.2
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 8.2e-25 118.2 163 47.2
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 8.2e-25 118.2 163 46.6
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 8.2e-25 118.2 163 46.6
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 1.1e-24 117.9 163 46.6
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 1.1e-24 117.9 163 46.0
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 1.1e-24 117.9 164 45.7
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.1e-24 117.9 163 46.6
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 1.4e-24 117.5 163 46.6
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 1.4e-24 117.5 163 46.6
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 1.8e-24 117.1 163 46.0
BcaNung05531 Brassica carinata HOM05D003944 ORTHO05D005521 1.8e-24 117.1 163 46.0
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 2.4e-24 116.7 163 46.6
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 2.4e-24 116.7 163 46.0
BraA05t22675Z Brassica rapa HOM05D003944 ORTHO05D005521 2.4e-24 116.7 163 46.0
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 2.4e-24 116.7 162 46.3
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 2.4e-24 116.7 163 46.0
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 2.4e-24 116.7 162 46.3
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 2.4e-24 116.7 162 46.3
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 4.1e-24 115.9 163 46.0
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 5.3e-24 115.5 162 45.7
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 5.3e-24 115.5 162 45.7
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 6.9e-24 115.2 163 46.6
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 6.9e-24 115.2 163 47.2
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 6.9e-24 115.2 162 45.7
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 1.2e-23 114.4 162 45.7
Sabra06G0026500 Salix brachista HOM05D003944 ORTHO05D005521 1.5e-23 114.0 163 46.6
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 2.0e-23 113.6 162 45.1
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 2.0e-23 113.6 163 44.8
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 2.0e-23 113.6 163 46.0
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 2.6e-23 113.2 163 46.0
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 2.6e-23 113.2 162 44.4
HPP92_028465 Vanilla planifolia HOM05D003944 ORTHO05D005521 2.6e-23 113.2 163 44.8
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 3.4e-23 112.8 162 44.4
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 4.5e-23 112.5 163 44.8
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 7.7e-23 111.7 163 45.4
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 1.3e-22 110.9 183 41.5
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 1.3e-22 110.9 163 44.8
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 1.3e-22 110.9 163 44.2
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 1.7e-22 110.5 186 41.4
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 5.0e-22 109.0 163 46.0
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 5.0e-22 109.0 163 46.0
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 4.2e-21 105.9 84 71.4
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 9.4e-21 104.8 162 43.8
vmacro11506 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 9.4e-21 104.8 84 71.4
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 1.6e-20 104.0 84 70.2
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 8.0e-20 101.7 84 69.0
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 1.4e-19 100.9 84 67.9
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 2.3e-19 100.1 211 35.5
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 3.0e-19 99.8 163 42.3
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 3.0e-19 99.8 163 39.9
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 3.0e-19 99.8 163 44.2
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 5.2e-19 99.0 163 39.9
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 1.5e-18 97.4 163 39.3
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 3.3e-18 96.3 84 64.3
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 5.7e-18 95.5 182 36.3
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 2.2e-17 93.6 163 38.0
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 3.7e-17 92.8 119 52.1
HPP92_006583 Vanilla planifolia HOM05D003944 ORTHO05D005521 6.3e-17 92.0 83 61.4
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 2.4e-16 90.1 163 40.5
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 3.1e-16 89.7 149 40.9
MCO09G035 Micromonas commoda HOM05D003944 ORTHO05D005521 1.3e-14 84.3 162 36.4
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 1.5e-13 80.9 163 36.8
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 9.4e-13 78.2 160 35.6
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 9.4e-13 78.2 134 41.8
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 2.1e-12 77.0 147 38.8
BcaC06g32114 Brassica carinata HOM05D003944 ORTHO05D000588 4.7e-12 75.9 158 34.8
A10p32020 Brassica napus HOM05D003944 ORTHO05D005521 1.4e-11 74.3 157 34.4
C09p72740 Brassica napus HOM05D003944 ORTHO05D005521 1.4e-11 74.3 157 34.4
BolC9t60013H Brassica oleracea HOM05D003944 ORTHO05D005521 1.4e-11 74.3 157 34.4
BraA10t45246Z Brassica rapa HOM05D003944 ORTHO05D005521 1.4e-11 74.3 157 34.4
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 1.4e-11 74.3 142 38.7
CSS0028458 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.8e-11 73.9 136 39.0
Carub.0006s0306 Capsella rubella HOM05D003944 ORTHO05D005521 4.0e-11 72.8 156 35.9
Sp6g38630 Schrenkiella parvula HOM05D003944 ORTHO05D005521 4.0e-11 72.8 156 34.6
CARHR209160 Cardamine hirsuta HOM05D003944 ORTHO05D005521 1.1e-08 64.7 153 32.7
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 2.4e-08 63.5 165 30.9
BcaB05g21815 Brassica carinata HOM05D003944 ORTHO05D005521 7.0e-08 62.0 139 35.3
AL6G13730 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 9.1e-08 61.6 154 32.5
C03p01880 Brassica napus HOM05D003944 ORTHO05D005521 1.6e-07 60.8 151 31.1
BraA03t09530Z Brassica rapa HOM05D003944 ORTHO05D005521 1.6e-07 60.8 132 32.6
BcaB01g05883 Brassica carinata HOM05D003944 ORTHO05D005521 2.0e-07 60.5 146 32.2
BolC3t12741H Brassica oleracea HOM05D003944 ORTHO05D005521 2.0e-07 60.5 146 32.2
A03p01530 Brassica napus HOM05D003944 ORTHO05D005521 2.7e-07 60.1 131 32.8
Cre10.g440750 Chlamydomonas reinhardtii HOM05D003944 ORTHO05D005521 3.5e-07 59.7 82 46.3
BcaB01g05766 Brassica carinata HOM05D003944 ORTHO05D005521 4.5e-07 59.3 162 31.5


User provided reference genes

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