Gene: AT5G04130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04130
  • Transcript Identifier AT5G04130.1
  • Gene Type Coding gene
  • Location Chr5 : 1122084-1128031 : negative

Gene Family Information

  • ID HOM05D003944
  • #Genes/#Species 177/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04130.1
  • symbol GYRB2
  • uniprot Q94BZ7

Descriptions

  • Description DNA GYRASE B2
  • Computational description DNA GYRASE B2 (GYRB2); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Toprim domain (InterPro:IPR006171), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B1 (TAIR:AT3G10270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
Gene OntologyDNA topological change
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity
GO:0003916
IGI
Gene OntologyDNA topoisomerase activity1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003918
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0034335
IDA
Gene OntologyDNA negative supercoiling activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
Gene Ontologychromosome
GO:0005694
IEA
InterProchromosome
GO:0005739
IDA
IEA
GOA Databasemitochondrion
GO:0005739
HDA
ISM
Gene Ontologymitochondrion3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013760 DNA topoisomerase, type IIA-like domain superfamily
IPR003594 Histidine kinase/HSP90-like ATPase
IPR000565 DNA topoisomerase, type IIA, subunit B
IPR011557 DNA gyrase, subunit B
IPR006171 TOPRIM domain
IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2
IPR034160 DNA gyrase subunit B, TOPRIM domain
IPR002288 DNA gyrase B subunit, C-terminal
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR001241 DNA topoisomerase, type IIA
IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal
Mapman id Description
13.5.3.2 Cell cycle organisation.organellar DNA replication.DNA gyrase complex.subunit B