Gene: CSS0028458
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0028458
- Transcript Identifier CSS0028458.1
- Gene Type Coding gene
- Location Chr10 : 150115064-150125365 : negative
Gene Family Information
- ID HOM05D003944
- #Genes/#Species 177/97
- Phylogenetic origin
- ID ORTHO05D005521
- #Genes/#Species 156/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid CSS0028458.1
Descriptions
- Description DNA topoisomerase 2 family protein [Populus trichocarpa]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | InterPro | DNA topological change |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003918 | IEA | InterPro | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003916 | ISO | PLAZA Integrative Orthology | DNA topoisomerase activity | AT5G04130 |
| GO:0034335 | ISO | PLAZA Integrative Orthology | DNA negative supercoiling activity | AT5G04130 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G10270 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G10270 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT3G10270 |
| GO:0005694 | ISO | PLAZA Homology (enrichment) | chromosome | HOM05D003944 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR001241 | DNA topoisomerase, type IIA |
| IPR002288 | DNA gyrase B subunit, C-terminal |
| IPR013506 | DNA topoisomerase, type IIA, subunit B, domain 2 |
| IPR013759 | DNA topoisomerase, type IIA, subunit B, C-terminal |
| IPR013760 | DNA topoisomerase, type IIA-like domain superfamily |
| IPR006171 | TOPRIM domain |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR000565 | DNA topoisomerase, type IIA, subunit B |
| Mapman id | Description |
|---|---|
| 13.5.3.2 | Cell cycle organisation.organellar DNA replication.DNA gyrase complex.subunit B |