Gene: COL.COLO4_21471

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_21471
  • Transcript Identifier COL.rna20223
  • Gene Type Coding gene
  • Location AWUE01017680.1 : 37665-49061 : negative

Gene Family Information

  • ID HOM05D003944
  • #Genes/#Species 177/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna20223
  • GenBank OMO85705.1
  • id gene21443
  • gene_name COLO4_21471
  • uniprot A0A1R3IT12

Descriptions

  • Description DNA topoisomerase, type IIA, subunit B
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003918
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0034335
ISO
PLAZA Integrative OrthologyDNA negative supercoiling activity AT5G04130

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G10270
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G10270
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G10270
GO:0005694
ISO
PLAZA Homology (enrichment)chromosome HOM05D003944

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR013760 DNA topoisomerase, type IIA-like domain superfamily
IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2
IPR000565 DNA topoisomerase, type IIA, subunit B
IPR003594 Histidine kinase/HSP90-like ATPase
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR006171 TOPRIM domain
IPR002288 DNA gyrase B subunit, C-terminal
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal
IPR001241 DNA topoisomerase, type IIA
Mapman id Description
13.5.3.2 Cell cycle organisation.organellar DNA replication.DNA gyrase complex.subunit B