Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 2235.7 1182 100.0
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1763.8 1202 79.0
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1691.4 1206 76.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1652.5 1227 74.2
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1589.3 1209 72.0
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1208 72.4
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1579.3 1206 72.2
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1577.8 1213 71.5
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1577.4 1205 71.9
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1208 71.3
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1572.4 1200 71.7
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1569.3 1194 71.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1563.5 1211 70.8
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1563.1 1206 70.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1558.5 1221 70.1
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1553.1 1206 72.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1551.2 1200 71.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1550.0 1171 72.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1548.5 1216 71.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1545.8 1203 70.8
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1544.6 1193 70.5
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1537.3 1179 70.7
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1536.9 1205 70.4
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1534.6 1207 69.7
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1531.5 1174 71.4
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1530.4 1203 70.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1526.5 1267 67.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1525.4 1210 70.0
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1525.0 1208 70.2
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1522.7 1183 69.9
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1519.2 1199 70.1
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1518.8 1207 69.6
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1515.7 1217 69.8
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1515.4 1196 70.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1515.4 1204 69.4
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1515.4 1191 70.0
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1511.9 1204 69.6
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1511.9 1214 69.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1511.9 1209 69.1
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1511.5 1206 68.7
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1511.5 1213 69.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1510.7 1145 72.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1510.4 1199 69.4
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1509.6 1193 69.3
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1508.4 1179 70.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1508.4 1227 69.0
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1503.4 1203 68.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1501.1 1233 67.2
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1202 68.7
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1217 67.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1499.6 1266 66.1
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1497.3 1213 69.3
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1494.6 1204 67.9
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1492.6 1204 68.4
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1492.6 1190 68.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1492.6 1190 68.0
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1492.2 1215 69.2
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1490.3 1205 67.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1489.6 1217 68.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1486.9 1225 67.8
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1481.1 1202 67.4
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1208 68.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1229 67.3
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1479.2 1190 67.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1476.8 1204 68.3
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1475.7 1209 68.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1459.1 1187 66.7
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1456.8 1182 67.8
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1453.0 1164 68.3
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1448.7 1201 66.6
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1448.7 1180 68.1
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1443.7 1183 67.8
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1443.7 1183 67.2
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1441.8 1123 69.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1438.7 1193 66.4
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1438.7 1175 67.8
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1436.4 1195 66.3
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1436.0 1200 66.6
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1433.7 1192 66.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1430.2 1189 66.5
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1429.1 1192 66.0
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1427.5 1192 65.9
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1422.5 1210 66.0
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1422.1 1202 65.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1417.1 1186 66.2
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1414.4 1204 65.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1407.5 1229 64.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1398.6 1199 65.1
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1386.3 1191 65.1
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1379.8 1311 61.2
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1377.5 1406 58.1
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1374.4 1182 65.3
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1362.8 1071 69.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1342.0 1206 64.2
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1332.8 1228 60.5
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1318.9 1183 62.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1314.7 1180 64.3
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1311.2 1239 61.3
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1294.6 1203 61.6
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1286.2 893 74.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1276.9 872 76.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1260.4 930 72.2
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1257.7 1257 59.5
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1120.9 838 70.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1119.4 790 75.2
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1112.8 1248 51.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 2.3e-309 1065.8 748 75.3
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 6.5e-304 1047.7 793 68.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.5e-284 981.1 896 64.7
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.1e-269 934.1 671 74.2
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-264 917.5 979 55.3
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-258 895.6 819 63.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-255 886.7 919 58.9
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.7e-196 688.7 613 63.0
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.3e-179 634.0 541 63.2
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 5.8e-167 592.8 974 38.5
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 4.0e-160 570.1 480 65.0
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.0e-147 527.3 377 72.7
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.4e-144 517.7 290 86.2
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 3.1e-136 490.7 447 63.8
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.3e-121 442.2 1140 32.5
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-116 424.9 373 64.3
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.3e-114 417.5 237 85.7
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 3.2e-109 401.0 832 37.1
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.7e-105 387.5 313 68.7
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.7e-102 378.6 375 61.6
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 7.7e-95 353.2 555 43.4
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.1e-93 349.4 1285 27.3
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.8e-81 308.1 212 72.2
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-80 305.1 215 73.0
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.1e-80 304.7 181 80.1
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.1e-80 304.7 181 80.1
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-79 302.8 215 72.6
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 8.5e-78 296.6 224 70.1
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-76 292.0 174 82.8
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 6.1e-68 263.8 389 49.6
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.8e-67 262.3 332 51.2
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 3.6e-60 238.0 388 44.1
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.9e-59 233.4 340 50.6
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.3e-54 218.8 165 67.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 3.0e-54 218.4 152 74.3
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.1e-53 216.5 369 45.8
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.6e-52 212.6 196 64.8
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.1e-51 208.4 155 69.0
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.9e-49 201.1 311 46.6
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.3e-45 188.3 138 67.4
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.3e-43 182.2 325 39.4
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.9e-40 172.6 117 68.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.2e-36 157.5 157 63.1
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.8e-35 154.1 94 79.8
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.7e-31 142.1 77 90.9
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 6.0e-31 141.0 83 79.5
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 7.8e-31 140.6 261 42.1
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 3.0e-30 138.7 155 58.7
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 6.6e-30 137.5 102 79.4
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.6e-29 133.7 110 61.8
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.3e-25 123.2 119 57.1
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 4.6e-23 114.8 66 86.4
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 5.1e-22 111.3 86 60.5
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 6.6e-22 110.9 96 69.8
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.7e-22 110.5 119 56.3
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-20 106.3 213 39.9
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.8e-20 104.8 72 68.1
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.0e-18 99.4 83 54.2
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.1e-16 93.6 59 83.1
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.9e-16 92.8 72 63.9
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.8e-14 86.3 69 59.4
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-13 82.8 77 54.5
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.5e-13 82.4 57 66.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 5.6e-13 81.3 56 66.1
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.1e-12 79.3 56 62.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 5.3e-11 74.7 46 82.6
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.0e-09 70.5 119 41.2
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.2e-08 65.5 113 39.8
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 1.8e-06 59.7 47 48.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.0e-06 58.9 42 61.9


User provided reference genes

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