Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 8.4e-185 650.2 328 100.0
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.1e-143 512.7 326 77.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 5.7e-141 504.6 327 77.7
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 8.6e-137 490.7 362 71.0
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.2e-132 476.1 327 72.8
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.4e-131 471.5 330 72.4
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.6e-130 469.9 330 72.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 7.8e-130 467.6 333 71.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.0e-129 467.2 328 71.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.3e-129 466.1 332 70.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-128 463.8 330 69.4
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.1e-128 463.8 332 69.9
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.5e-128 463.4 326 69.9
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.2e-127 460.3 345 67.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.8e-127 459.1 329 70.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 3.6e-127 458.8 328 71.0
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.7e-127 458.4 327 72.5
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.7e-127 458.4 329 72.0
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.7e-127 458.4 325 71.1
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 6.2e-127 458.0 325 69.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 8.0e-127 457.6 332 68.7
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.8e-126 456.4 332 70.5
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 2.3e-126 456.1 363 65.3
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.3e-126 456.1 329 70.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 3.1e-126 455.7 331 70.1
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.0e-126 455.3 326 69.3
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.2e-126 454.9 327 69.7
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.8e-126 454.5 329 71.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.5e-125 453.4 326 68.7
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.6e-125 452.6 328 68.6
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.8e-125 451.4 326 68.7
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 7.5e-125 451.1 326 68.1
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.9e-124 449.1 329 67.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 3.7e-124 448.7 330 68.5
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.1e-123 447.2 325 69.2
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.1e-123 445.3 324 70.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.1e-123 445.3 332 67.5
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 326 68.7
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.4e-123 444.9 330 69.1
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 7.0e-123 444.5 332 67.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 9.2e-123 444.1 353 64.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 9.2e-123 444.1 329 69.0
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.0e-122 443.0 329 68.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 68.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.7e-122 442.6 325 67.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.5e-122 442.2 330 67.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.5e-122 442.2 329 69.0
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.6e-122 441.8 295 74.6
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 6.0e-122 441.4 331 68.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.0e-122 441.4 331 68.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.7e-121 439.9 332 68.4
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.7e-121 439.9 326 66.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.3e-121 439.5 331 67.7
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.0e-121 439.1 325 67.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 3.9e-121 438.7 328 66.5
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.6e-121 438.0 331 67.7
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.6e-121 438.0 325 67.1
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.6e-121 438.0 331 66.5
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.6e-121 438.0 328 64.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 8.6e-121 437.6 325 66.8
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 8.6e-121 437.6 329 65.7
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-120 437.2 328 66.5
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 66.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-120 436.4 328 66.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.3e-120 435.6 331 67.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 9.5e-120 434.1 327 65.7
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.5e-120 434.1 329 67.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.6e-119 433.3 326 66.9
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.1e-119 433.0 328 67.7
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 3.6e-119 432.2 327 65.7
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.6e-119 432.2 325 66.8
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 8.1e-119 431.0 331 65.6
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.1e-118 430.6 332 65.1
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.4e-118 430.3 327 65.1
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.8e-118 429.9 328 67.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.1e-118 429.1 326 64.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 8.9e-118 427.6 330 65.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.2e-117 427.2 326 69.3
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.2e-117 427.2 328 66.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.5e-117 426.8 325 68.6
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 5.8e-117 424.9 327 64.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.8e-117 424.9 326 67.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 9.8e-117 424.1 330 66.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.3e-116 423.7 325 66.2
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.7e-116 423.3 326 63.5
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.7e-116 423.3 321 67.9
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 4.9e-116 421.8 327 63.3
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 8.3e-116 421.0 327 63.3
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-115 420.6 327 63.9
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.1e-115 420.6 276 75.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.6e-114 416.8 326 62.0
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.1e-114 416.4 326 62.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.0e-113 414.1 329 61.4
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.9e-113 412.1 325 64.0
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.3e-112 409.1 339 60.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-110 404.1 399 55.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 3.7e-108 395.6 323 61.9
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-107 393.7 314 65.6
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 7.1e-107 391.3 325 61.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.2e-106 390.6 325 61.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 6.6e-105 384.8 327 59.6
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.2e-103 380.6 330 60.9
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 4.0e-102 375.6 276 67.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.2e-102 375.2 323 61.0
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.1e-99 367.5 331 58.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.6e-98 362.1 327 58.1
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.1e-94 350.9 325 57.5
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.0e-89 332.8 322 53.4
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.5e-88 330.5 329 53.2
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.3e-87 327.4 320 55.6
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.1e-86 324.3 324 55.6
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-86 324.3 326 53.7
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.4e-84 315.1 323 53.3
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.7e-82 309.7 318 50.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.6e-79 300.4 278 58.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 5.3e-78 295.4 318 52.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.1e-75 287.7 197 72.1
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.8e-73 280.4 177 78.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.3e-73 280.0 328 47.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.3e-64 249.2 213 59.6
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.3e-64 249.2 194 66.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.3e-64 249.2 273 46.2
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.6e-61 240.0 188 65.4
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.9e-59 233.8 326 45.1
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.5e-59 232.3 329 44.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 6.7e-57 225.3 287 41.5
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-56 224.2 195 54.9
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-56 224.2 268 49.3
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-53 214.2 143 70.6
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.8e-49 200.7 155 60.0
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 5.7e-48 195.7 133 69.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.7e-47 194.1 133 67.7
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 8.5e-44 181.8 264 40.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 7.2e-43 178.7 139 64.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.6e-42 177.6 148 59.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.5e-40 171.0 131 66.4
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 4.4e-40 169.5 129 66.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.7e-39 167.5 226 42.9
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.0e-36 158.3 178 47.2
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.3e-36 157.9 244 38.1
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 5.0e-36 156.0 89 77.5
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.2e-34 151.4 139 56.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.2e-34 151.4 144 53.5
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-34 150.2 144 50.7
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 8.0e-34 148.7 197 40.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.0e-33 148.3 116 62.9
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 4.1e-30 136.3 176 42.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-29 134.4 155 45.2
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.5e-28 129.0 127 52.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.5e-27 127.9 81 69.1
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 6.1e-26 122.5 126 48.4
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.4e-22 109.4 117 49.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 7.8e-21 105.5 193 37.8
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-20 104.8 89 58.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-20 104.8 89 58.4
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.3e-20 104.0 68 73.5
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-19 101.7 89 57.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.4e-14 84.7 120 45.0
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 5.0e-12 76.3 62 61.3
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 6.6e-12 75.9 55 65.5
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-10 71.2 60 60.0
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 7.5e-08 62.4 50 60.0
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 3.2e-06 57.0 33 75.8


User provided reference genes

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