Gene: AT1G03360

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G03360
  • Transcript Identifier AT1G03360.1
  • Gene Type Coding gene
  • Location Chr1 : 824653-826179 : positive

Gene Family Information

  • ID HOM05D004465
  • #Genes/#Species 161/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G03360.1
  • symbol RRP4
  • Alias ATRRP4,ribosomal RNA processing 4
  • uniprot Q9ZVT7

Descriptions

  • Description ribosomal RNA processing 4
  • Computational description ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0071049
IBA
Gene Ontologynuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription1
GO:0043928
IBA
Gene Ontologyexonucleolytic catabolism of deadenylated mRNA1
GO:0000460
IMP
Gene Ontologymaturation of 5.8S rRNA2
GO:0071051
IBA
Gene Ontologypolyadenylation-dependent snoRNA 3'-end processing1
GO:0071038
IBA
Gene Ontologynuclear polyadenylation-dependent tRNA catabolic process1
GO:0071035
IBA
Gene Ontologynuclear polyadenylation-dependent rRNA catabolic process1
GO:0034475
IBA
Gene OntologyU4 snRNA 3'-end processing1
GO:0034427
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1
GO:0071034
IBA
Gene OntologyCUT catabolic process1
GO:0000467
IBA
Gene Ontologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0060149
IMP
Gene Ontologynegative regulation of posttranscriptional gene silencing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
GOA Databaseexosome (RNase complex)
GO:0000178
IBA
Gene Ontologyexosome (RNase complex)1
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm2
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus2
GO:0000177
IBA
Gene Ontologycytoplasmic exosome (RNase complex)1
GO:0000176
IBA
Gene Ontologynuclear exosome (RNase complex)1
GO:0005654
IDA
Gene Ontologynucleoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004088 K Homology domain, type 1
IPR036612 K Homology domain, type 1 superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR026699 Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR022967 RNA-binding domain, S1
Mapman id Description
16.4.1.1.7 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP4