Gene: ATR0626G226

General Information

Structural Information

  • Species Amborella trichopoda
  • Gene Identifier ATR0626G226
  • Transcript Identifier ATR0626G226.1
  • Gene Type Coding gene
  • Location AmTr_v1.0_scaffold00025 : 1932841-1938141 : positive

Gene Family Information

  • ID HOM05D004465
  • #Genes/#Species 161/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id evm_27.TU.AmTr_v1.0_scaffold00025.142.v1.0
  • pacid 31566559

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000460
ISO
PLAZA Integrative Orthologymaturation of 5.8S rRNA AT1G03360
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G03360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G03360
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G03360
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G03360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR022967 RNA-binding domain, S1
IPR026699 Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR004088 K Homology domain, type 1
IPR036612 K Homology domain, type 1 superfamily
Mapman id Description
16.4.1.1.7 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP4