Gene: Sopen09g028910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g028910
  • Transcript Identifier Sopen09g028910.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 77143095-77147502 : positive

Gene Family Information

  • ID HOM05D004465
  • #Genes/#Species 161/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g028910.1

Descriptions

  • Description ribosomal RNA processing 4 (RRP4) | FUNCTIONS IN: exonuclease activity | LOCATED IN: mitochondrion | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000460
ISO
PLAZA Integrative Orthologymaturation of 5.8S rRNA AT1G03360
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G03360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G03360
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G03360
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G03360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026699 Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR022967 RNA-binding domain, S1
IPR004088 K Homology domain, type 1
IPR036612 K Homology domain, type 1 superfamily
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.4.1.1.7 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP4