Gene: Thhalv10008200m.g

General Information

Structural Information

  • Species Eutrema salsugineum
  • Gene Identifier Thhalv10008200m.g
  • Transcript Identifier Thhalv10008200m
  • Gene Type Coding gene
  • Location scaffold_5 : 14799211-14800817 : negative

Gene Family Information

  • ID HOM05D004465
  • #Genes/#Species 161/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thhalv10008200m.g.v1.0
  • pacid 20187469

Descriptions

  • Description K03679 - exosome complex component RRP4 (RRP4, EXOSC2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000460
ISO
PLAZA Integrative Orthologymaturation of 5.8S rRNA AT1G03360
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G03360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G03360
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G03360
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G03360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026699 Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR004088 K Homology domain, type 1
IPR036612 K Homology domain, type 1 superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR022967 RNA-binding domain, S1
Mapman id Description
16.4.1.1.7 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP4