Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g11 Utricularia gibba HOM05D001674 ORTHO05D008374 7.4e-155 550.4 268 100.0
MSTRG.9601 Avicennia marina HOM05D001674 ORTHO05D008374 2.0e-75 286.6 240 62.5
GSVIVG01007916001 Vitis vinifera HOM05D001674 ORTHO05D008374 3.7e-69 265.8 241 57.7
Oeu032215.1 Olea europaea HOM05D001674 ORTHO05D008374 1.1e-68 264.2 240 56.2
Migut.D01671 Erythranthe guttata HOM05D001674 ORTHO05D008374 9.0e-68 261.2 235 57.0
SalBow7G3861 Salvia bowleyana HOM05D001674 ORTHO05D008374 1.2e-67 260.8 227 58.1
Nitab4.5_0002881g0060 Nicotiana tabacum HOM05D001674 ORTHO05D008374 2.6e-67 259.6 237 56.5
Sopen03g034520 Solanum pennellii HOM05D001674 ORTHO05D008374 1.3e-66 257.3 239 57.7
Dinv38776 Davidia involucrata HOM05D001674 ORTHO05D008374 1.9e-65 253.4 238 55.9
Nitab4.5_0004511g0090 Nicotiana tabacum HOM05D001674 ORTHO05D008374 5.5e-65 251.9 264 51.1
Cfa019293 Carpinus fangiana HOM05D001674 ORTHO05D008374 1.2e-64 250.8 237 57.0
CAN.G479.34 Capsicum annuum HOM05D001674 ORTHO05D008374 2.1e-64 250.0 237 56.5
Prupe.5G200300 Prunus persica HOM05D001674 ORTHO05D008374 2.1e-64 250.0 241 54.8
Lalb_Chr22g0355251 Lupinus albus HOM05D001674 ORTHO05D008374 4.6e-64 248.8 235 55.3
Lj9C469T4 Lonicera japonica HOM05D001674 ORTHO05D008374 7.9e-64 248.1 237 54.9
ClCG06G015870 Citrullus lanatus HOM05D001674 ORTHO05D008374 1.3e-63 247.3 235 54.5
SGA_v2.0_scaffold65G22108 Striga asiatica HOM05D001674 ORTHO05D008374 1.3e-63 247.3 240 55.8
CsaV3_1G002690 Cucumis sativus L. HOM05D001674 ORTHO05D008374 1.8e-63 246.9 233 54.1
Sed0002195 Sechium edule HOM05D001674 ORTHO05D008374 2.3e-63 246.5 230 54.3
Haze_07675 Corylus avellana HOM05D001674 ORTHO05D008374 1.9e-62 243.4 237 55.7
vmacro17583 Vaccinium macrocarpon HOM05D001674 ORTHO05D008374 3.3e-62 242.7 244 53.7
CANSAT80G0757 Cannabis sativa HOM05D001674 ORTHO05D008374 4.3e-62 242.3 235 55.3
MD14G1208200 Malus domestica HOM05D001674 ORTHO05D008374 1.3e-61 240.7 242 52.9
CSS0045245 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D008374 2.2e-61 240.0 237 54.0
Rhsim08G0149800 Rhododendron simsii HOM05D000001 ORTHO05D008374 3.7e-61 239.2 243 53.9
Cc00_g02240 Coffea canephora HOM05D001674 ORTHO05D008374 6.3e-61 238.4 248 52.4
Ciclev10018579m.g Citrus clementina HOM05D001674 ORTHO05D008374 4.1e-60 235.7 234 53.0
TAR371G1295 Trochodendron aralioides HOM05D001674 ORTHO05D008374 4.1e-60 235.7 232 53.0
Manes.06G087800 Manihot esculenta HOM05D001674 ORTHO05D008374 9.0e-60 234.6 232 51.7
RcHm_v2.0_Chr7g0182391 Rosa chinensis HOM05D001674 ORTHO05D008374 1.2e-59 234.2 236 53.0
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.0e-59 233.4 241 51.5
PGR083G1883 Punica granatum HOM05D001674 ORTHO05D008374 3.4e-59 232.6 245 49.4
FvH4_5g14341 Fragaria vesca HOM05D001674 ORTHO05D008374 5.9e-59 231.9 239 51.9
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 5.9e-59 231.9 239 51.9
Psat5g198440 Pisum sativum HOM05D001674 ORTHO05D008374 5.9e-59 231.9 233 54.9
DCAR_026018 Daucus carota HOM05D001674 ORTHO05D008374 1.0e-58 231.1 239 49.8
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.2e-58 229.9 239 51.5
Atru.chr9.282 Acer truncatum HOM05D001674 ORTHO05D008374 5.0e-58 228.8 227 54.6
TWI15G0866 Tripterygium wilfordii HOM05D001674 ORTHO05D008374 5.0e-58 228.8 240 50.8
Nn4g23350 Nelumbo nucifera HOM05D001674 ORTHO05D008374 6.5e-58 228.4 233 52.8
Lj1g0003467 Lotus japonicus HOM05D001674 ORTHO05D008374 4.2e-57 225.7 232 52.2
Hund09848 Selenicereus undatus HOM05D001674 ORTHO05D008374 4.2e-57 225.7 231 51.1
Gohir.A03G068966 Gossypium hirsutum HOM05D001674 ORTHO05D008374 1.2e-56 224.2 240 51.2
Phvul.009G190731 Phaseolus vulgaris HOM05D001674 ORTHO05D008374 3.6e-56 222.6 241 49.8
Gohir.D03G095500 Gossypium hirsutum HOM05D001674 ORTHO05D008374 4.6e-56 222.2 239 51.5
Potri.012G067000 Populus trichocarpa HOM05D001674 ORTHO05D008374 7.9e-56 221.5 240 48.3
Eucgr.B00565 Eucalyptus grandis HOM05D001674 ORTHO05D008374 1.0e-55 221.1 250 47.2
Cpa.g.sc2632.1 Carica papaya HOM05D001674 ORTHO05D008374 2.3e-55 219.9 238 50.4
TPR.G12256 Trifolium pratense HOM05D001674 ORTHO05D008374 3.9e-55 219.2 233 53.2
Gorai.003G100200 Gossypium raimondii HOM05D001674 ORTHO05D008374 5.1e-55 218.8 240 50.4
Sabra12G0048100 Salix brachista HOM05D001674 ORTHO05D008374 5.1e-55 218.8 239 48.5
EL10Ac5g11090 Beta vulgaris HOM05D001674 ORTHO05D008374 1.5e-54 217.2 237 48.9
Thecc.03G096600 Theobroma cacao HOM05D001674 ORTHO05D008374 4.3e-54 215.7 242 49.6
AUR62021607 Chenopodium quinoa HOM05D001674 ORTHO05D008374 9.7e-54 214.5 229 50.2
Sc12g0006560 Simmondsia chinensis HOM05D001674 ORTHO05D008374 1.3e-53 214.2 260 47.7
Aqoxy3G00457 Aquilegia oxysepala HOM05D001674 ORTHO05D008374 3.7e-53 212.6 228 52.2
SHI26981 Sapria himalayana HOM05D001674 ORTHO05D008374 3.7e-53 212.6 232 48.3
VMungo1309G2923 Vigna mungo HOM05D001674 ORTHO05D008374 8.2e-53 211.5 241 48.5
AUR62008488 Chenopodium quinoa HOM05D001674 ORTHO05D008374 1.4e-52 210.7 235 50.6
Glyma.06G199800 Glycine max HOM05D001674 ORTHO05D008374 2.4e-52 209.9 248 47.6
Ah.11g048050 Amaranthus hybridus HOM05D001674 ORTHO05D008374 3.1e-52 209.5 240 46.7
THA.LOC104818327 Tarenaya hassleriana HOM05D001674 ORTHO05D008374 5.3e-52 208.8 237 49.8
PSO017G4168 Papaver somniferum HOM05D001674 ORTHO05D008374 9.1e-52 208.0 229 50.7
AL6G18150 Arabidopsis lyrata HOM05D001674 ORTHO05D008374 6.5e-50 201.8 236 48.7
Aa31LG3G18650 Aethionema arabicum HOM05D001674 ORTHO05D008374 2.5e-49 199.9 227 47.1
AT5G07810 Arabidopsis thaliana HOM05D001674 ORTHO05D008374 4.2e-49 199.1 235 47.7
Thhalv10012481m.g Eutrema salsugineum HOM05D001674 ORTHO05D008374 1.6e-48 197.2 236 46.6
Sp6g35120 Schrenkiella parvula HOM05D001674 ORTHO05D008374 1.6e-48 197.2 239 46.0
Carub.0006s0673 Capsella rubella HOM05D001674 ORTHO05D008374 1.0e-47 194.5 235 45.5
HanXRQChr14g0426861 Helianthus annuus HOM05D001674 ORTHO05D008374 1.0e-47 194.5 193 51.3
CARHR205370 Cardamine hirsuta HOM05D001674 ORTHO05D008374 1.5e-46 190.7 236 45.3
BraA03t09697Z Brassica rapa HOM05D001674 ORTHO05D008374 2.0e-46 190.3 202 49.0
Lsat_1_v5_gn_5_21720 Lactuca sativa HOM05D001674 ORTHO05D008374 2.0e-46 190.3 212 49.1
A03p03470 Brassica napus HOM05D001674 ORTHO05D008374 4.4e-46 189.1 202 48.5
BolC3t12927H Brassica oleracea HOM05D001674 ORTHO05D008374 4.4e-46 189.1 202 48.5
MELO3C017204.2 Cucumis melo HOM05D001674 ORTHO05D008374 9.7e-46 188.0 233 45.9
C03p03890 Brassica napus HOM05D001674 ORTHO05D008374 2.2e-45 186.8 162 55.6
ATR0064G032 Amborella trichopoda HOM05D001674 ORTHO05D008374 9.1e-44 181.4 229 42.4
Peaxi162Scf00201g00024 Petunia axillaris HOM05D001674 ORTHO05D008374 2.9e-42 176.4 123 65.9
arahy.Tifrunner.gnm1.ann1.1X400K Arachis hypogaea HOM05D001674 ORTHO05D008374 1.9e-41 173.7 233 44.6
arahy.Tifrunner.gnm1.ann1.D3EHI2 Arachis hypogaea HOM05D001674 ORTHO05D008374 1.9e-41 173.7 233 44.6
HPP92_013437 Vanilla planifolia HOM05D001674 ORTHO05D008374 2.2e-37 160.2 259 39.8
Ca_13630_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008374 5.3e-36 155.6 120 62.5
Zm00001eb326710 Zea mays HOM05D001674 ORTHO05D008374 1.0e-31 141.4 256 36.7
Os07g0598300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008374 2.8e-29 133.3 229 37.1
CDE04G0389 Ceratophyllum demersum HOM05D001674 ORTHO05D008374 8.3e-29 131.7 122 54.9
SEGI_29143 Sequoiadendron giganteum HOM05D001674 ORTHO05D008374 3.1e-28 129.8 124 48.4
Pp3c1_13300 Physcomitrium patens HOM05D001674 ORTHO05D008374 4.0e-23 112.8 104 50.0
Pp3c1_13308 Physcomitrium patens HOM05D001674 ORTHO05D008374 4.0e-23 112.8 104 50.0
SMO358G0589 Selaginella moellendorffii HOM05D001674 ORTHO05D008374 2.0e-22 110.5 108 49.1
AagrBONN_evm.TU.Sc2ySwM_117.3709 Anthoceros agrestis HOM05D001674 ORTHO05D008374 4.5e-19 99.4 157 34.4
Solyc03g115530.4 Solanum lycopersicum HOM05D001674 ORTHO05D008374 4.4e-14 82.8 116 45.7
Actinidia09242 Actinidia chinensis HOM05D001674 ORTHO05D008374 6.6e-10 68.9 141 36.9
MCO15G340 Micromonas commoda HOM05D001674 ORTHO05D008374 6.6e-10 68.9 51 64.7
COL.COLO4_36884 Corchorus olitorius HOM05D001674 ORTHO05D008374 8.6e-10 68.6 121 35.5
Aqoxy2G02487 Aquilegia oxysepala HOM05D001674 ORTHO05D005257 1.9e-09 67.4 45 68.9
PSO170G0915 Papaver somniferum HOM05D001674 ORTHO05D005257 2.5e-09 67.0 55 58.2
PRCOL_00003770 Prasinoderma coloniale HOM05D001674 ORTHO05D008374 2.5e-09 67.0 51 62.7
Rhsim04G0249200 Rhododendron simsii HOM05D001674 ORTHO05D005257 3.3e-09 66.6 56 57.1
CANSAT78G0587 Cannabis sativa HOM05D001674 ORTHO05D005257 9.5e-09 65.1 45 68.9
AUR62002539 Chenopodium quinoa HOM05D001674 ORTHO05D005257 9.5e-09 65.1 45 68.9
PSO445G0012 Papaver somniferum HOM05D001674 ORTHO05D005257 9.5e-09 65.1 45 64.4
CBR_g29672 Chara braunii HOM05D001674 ORTHO05D005257 1.2e-08 64.7 40 72.5
MELO3C006754.2 Cucumis melo HOM05D001674 ORTHO05D005257 1.2e-08 64.7 57 52.6
SEGI_26199 Sequoiadendron giganteum HOM05D001674 ORTHO05D005257 1.2e-08 64.7 44 70.5
CiPaw.01G127900 Carya illinoinensis HOM05D001674 ORTHO05D005257 1.6e-08 64.3 45 64.4
Migut.N03098 Erythranthe guttata HOM05D001674 ORTHO05D005257 1.6e-08 64.3 45 66.7
Manes.03G212800 Manihot esculenta HOM05D001674 ORTHO05D005257 1.6e-08 64.3 45 66.7
vmacro08016 Vaccinium macrocarpon HOM05D001674 ORTHO05D005257 1.6e-08 64.3 45 66.7
Dinv24721 Davidia involucrata HOM05D001674 ORTHO05D005257 2.1e-08 63.9 45 64.4
ATR0796G053 Amborella trichopoda HOM05D001674 ORTHO05D005257 2.8e-08 63.5 54 57.4
Gohir.A06G112800 Gossypium hirsutum HOM05D001674 ORTHO05D005257 2.8e-08 63.5 45 64.4
Gorai.010G135100 Gossypium raimondii HOM05D001674 ORTHO05D005257 2.8e-08 63.5 45 64.4
Os07g0636200 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D005257 2.8e-08 63.5 45 66.7
Actinidia18515 Actinidia chinensis HOM05D001674 ORTHO05D005257 3.6e-08 63.2 45 66.7
AUR62023654 Chenopodium quinoa HOM05D001674 ORTHO05D005257 3.6e-08 63.2 45 66.7
Cc03_g00030 Coffea canephora HOM05D001674 ORTHO05D005257 3.6e-08 63.2 40 72.5
Lalb_Chr13g0299021 Lupinus albus HOM05D001674 ORTHO05D005257 3.6e-08 63.2 45 66.7
MSTRG.22009 Avicennia marina HOM05D001674 ORTHO05D005257 4.7e-08 62.8 45 68.9
CsaV3_3G015550 Cucumis sativus L. HOM05D001674 ORTHO05D005257 4.7e-08 62.8 45 62.2
Peaxi162Scf00323g00935 Petunia axillaris HOM05D001674 ORTHO05D005257 4.7e-08 62.8 40 72.5
THA.LOC104802617 Tarenaya hassleriana HOM05D001674 ORTHO05D005257 4.7e-08 62.8 44 65.9
unitig_8.g3632 Utricularia gibba HOM05D001674 ORTHO05D005257 4.7e-08 62.8 45 66.7
CSS0042912 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D005257 6.1e-08 62.4 45 62.2
CAN.G484.96 Capsicum annuum HOM05D001674 ORTHO05D005257 6.1e-08 62.4 40 72.5
Duzib235G1161 Durio zibethinus HOM05D001674 ORTHO05D005257 6.1e-08 62.4 41 68.3
Medtr4g124090 Medicago truncatula HOM05D001674 ORTHO05D005257 6.1e-08 62.4 45 62.2
Potri.010G003300 Populus trichocarpa HOM05D001674 ORTHO05D005257 6.1e-08 62.4 45 62.2
SMO364G0824 Selaginella moellendorffii HOM05D001674 ORTHO05D005257 6.1e-08 62.4 50 62.0
Ciclev10004488m.g Citrus clementina HOM05D001674 ORTHO05D005257 8.0e-08 62.0 41 68.3
HanXRQChr05g0148951 Helianthus annuus HOM05D001674 ORTHO05D005257 8.0e-08 62.0 45 62.2
Lsat_1_v5_gn_6_118341 Lactuca sativa HOM05D001674 ORTHO05D005257 8.0e-08 62.0 45 64.4
Nitab4.5_0012375g0010 Nicotiana tabacum HOM05D001674 ORTHO05D005257 8.0e-08 62.0 40 70.0
Prupe.1G103200 Prunus persica HOM05D001674 ORTHO05D005257 8.0e-08 62.0 47 59.6
GSVIVG01017700001 Vitis vinifera HOM05D001674 ORTHO05D005257 8.0e-08 62.0 45 62.2
ClCG05G006880 Citrullus lanatus HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 62.2
ECA246G1105 Erigeron canadensis HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 64.4
Glyma.13G118200 Glycine max HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 64.4
Glyma.17G041700 Glycine max HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 64.4
MD16G1134000 Malus domestica HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 62.2
QL06p014511 Quercus lobata HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 62.2
Sabra10G0002600 Salix brachista HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 60.0
Sed0007966 Sechium edule HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 62.2
Thecc.05G189900 Theobroma cacao HOM05D001674 ORTHO05D005257 1.0e-07 61.6 41 68.3
VMungo1215G3338 Vigna mungo HOM05D001674 ORTHO05D005257 1.0e-07 61.6 45 64.4
Zm00001eb328680 Zea mays HOM05D001674 ORTHO05D005257 1.0e-07 61.6 44 63.6
EL10Ac3g06234 Beta vulgaris HOM05D001674 ORTHO05D005257 1.4e-07 61.2 45 62.2
Cfa015741 Carpinus fangiana HOM05D001674 ORTHO05D005257 1.4e-07 61.2 45 62.2
Lj3C842G5 Lonicera japonica HOM05D001674 ORTHO05D005257 1.4e-07 61.2 40 70.0
Lj4g0019577 Lotus japonicus HOM05D001674 ORTHO05D005257 1.4e-07 61.2 41 68.3
Phvul.003G123100 Phaseolus vulgaris HOM05D001674 ORTHO05D005257 1.4e-07 61.2 45 64.4
Pp3c16_16990 Physcomitrium patens HOM05D001674 ORTHO05D005257 1.4e-07 61.2 42 69.0
Solyc12g098860.2 Solanum lycopersicum HOM05D001674 ORTHO05D005257 1.4e-07 61.2 40 70.0
Sopen12g033610 Solanum pennellii HOM05D001674 ORTHO05D005257 1.4e-07 61.2 40 70.0
Gohir.D06G117500 Gossypium hirsutum HOM05D001674 ORTHO05D005257 1.8e-07 60.8 40 70.0
Nitab4.5_0000978g0050 Nicotiana tabacum HOM05D001674 ORTHO05D005257 1.8e-07 60.8 40 67.5
Sp1g35260 Schrenkiella parvula HOM05D001674 ORTHO05D005257 1.8e-07 60.8 45 62.2
Sc25g0001840 Simmondsia chinensis HOM05D001674 ORTHO05D005257 1.8e-07 60.8 45 60.0
TAR362G1045 Trochodendron aralioides HOM05D001674 ORTHO05D005257 1.8e-07 60.8 45 62.2
BcaB02g11412 Brassica carinata HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
BcaC05g27587 Brassica carinata HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
A05p21130 Brassica napus HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
C05p35670 Brassica napus HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
BolC5t32283H Brassica oleracea HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
BraA05t21018Z Brassica rapa HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
Thhalv10011287m.g Eutrema salsugineum HOM05D001674 ORTHO05D005257 2.3e-07 60.5 44 63.6
MBI19_g30290_MAGBIO Magnolia biondii HOM05D001674 ORTHO05D005257 2.3e-07 60.5 45 62.2
AL1G54910 Arabidopsis lyrata HOM05D001674 ORTHO05D005257 4.0e-07 59.7 47 57.4
Carub.0001s3744 Capsella rubella HOM05D001674 ORTHO05D005257 5.2e-07 59.3 44 61.4
AT1G48310 Arabidopsis thaliana HOM05D001674 ORTHO05D005257 6.8e-07 58.9 44 61.4
RcHm_v2.0_Chr4g0427901 Rosa chinensis HOM05D001674 ORTHO05D005257 6.8e-07 58.9 47 57.4
Cre03.g199350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005257 8.9e-07 58.5 56 53.6
Ca_21367_v3 Cicer arietinum L. HOM05D001674 ORTHO05D005257 8.9e-07 58.5 45 60.0
PGR004G0096 Punica granatum HOM05D001674 ORTHO05D005257 8.9e-07 58.5 45 64.4
Eucgr.H04132 Eucalyptus grandis HOM05D001674 ORTHO05D005257 1.2e-06 58.2 45 62.2
FvH4_4g21690 Fragaria vesca HOM05D001674 ORTHO05D005257 1.2e-06 58.2 47 55.3
TPR.G12547 Trifolium pratense HOM05D001674 ORTHO05D005257 1.2e-06 58.2 45 60.0
MD13G1138200 Malus domestica HOM05D000021 ORTHO05D005257 1.5e-06 57.8 45 60.0
MCO12G185 Micromonas commoda HOM05D000104 ORTHO05D005257 2.0e-06 57.4 42 54.8
Psat0s1206g0200 Pisum sativum HOM05D001674 ORTHO05D005257 2.0e-06 57.4 45 60.0
Mapoly0113s0030 Marchantia polymorpha HOM05D000104 ORTHO05D005257 4.4e-06 56.2 36 72.2
SalBow6G2708 Salvia bowleyana HOM05D001674 ORTHO05D005257 4.4e-06 56.2 45 57.8
PRCOL_00002706 Prasinoderma coloniale HOM05D000104 ORTHO05D005257 9.8e-06 55.1 44 59.1


User provided reference genes

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