Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VYC4MA Arachis hypogaea HOM05D001045 ORTHO05D004836 2.3e-204 715.3 347 100.0
arahy.Tifrunner.gnm1.ann1.3PZ9PI Arachis hypogaea HOM05D001045 ORTHO05D004836 1.1e-163 580.1 347 85.6
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 4.3e-163 578.2 347 85.3
Glyma.04G194600 Glycine max HOM05D001045 ORTHO05D004836 4.0e-161 571.6 347 84.1
Glyma.06G171400 Glycine max HOM05D001045 ORTHO05D004836 5.8e-160 567.8 347 83.0
Lalb_Chr23g0273561 Lupinus albus HOM05D001045 ORTHO05D004836 2.1e-157 559.3 347 81.6
Medtr3g089020 Medicago truncatula HOM05D001045 ORTHO05D004836 3.5e-157 558.5 347 81.3
Psat5g139840 Pisum sativum HOM05D001045 ORTHO05D004836 3.5e-157 558.5 347 80.7
Ca_24509_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 1.0e-156 557.0 347 81.3
arahy.Tifrunner.gnm1.ann1.XN7UED Arachis hypogaea HOM05D001045 ORTHO05D004836 6.7e-156 554.3 349 80.8
Lalb_Chr11g0069641 Lupinus albus HOM05D001045 ORTHO05D004836 2.5e-155 552.4 347 80.7
VMungo1215G2889 Vigna mungo HOM05D001045 ORTHO05D004836 3.3e-155 552.0 349 80.5
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 9.6e-155 550.4 349 80.5
Haze_07234 Corylus avellana HOM05D001045 ORTHO05D004836 1.6e-154 549.7 346 79.8
Cfa018840 Carpinus fangiana HOM05D001045 ORTHO05D004836 2.1e-154 549.3 348 80.2
Phvul.003G209600 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 2.1e-154 549.3 349 79.4
Glyma.17G128500 Glycine max HOM05D001045 ORTHO05D004836 4.8e-154 548.1 349 79.4
Nn3g16511 Nelumbo nucifera HOM05D001045 ORTHO05D004836 6.2e-154 547.7 347 80.1
Lj1g0009758 Lotus japonicus HOM05D001045 ORTHO05D004836 8.2e-154 547.4 347 79.8
Ciclev10018763m.g Citrus clementina HOM05D001045 ORTHO05D004836 1.4e-153 546.6 346 79.8
QL10p004119 Quercus lobata HOM05D001045 ORTHO05D004836 2.4e-153 545.8 347 79.0
Psat4g062560 Pisum sativum HOM05D001045 ORTHO05D004836 4.0e-153 545.0 347 78.7
Atru.chr9.1079 Acer truncatum HOM05D001045 ORTHO05D004836 5.3e-153 544.7 349 79.4
TAR629G1776 Trochodendron aralioides HOM05D001045 ORTHO05D004836 5.3e-153 544.7 347 79.5
Dinv11158 Davidia involucrata HOM05D001045 ORTHO05D004836 9.0e-153 543.9 349 79.9
MD06G1143600 Malus domestica HOM05D001045 ORTHO05D004836 2.0e-152 542.7 347 79.0
Prupe.5G152800 Prunus persica HOM05D001045 ORTHO05D004836 4.5e-152 541.6 347 78.7
Thecc.03G126800 Theobroma cacao HOM05D001045 ORTHO05D004836 4.5e-152 541.6 349 79.1
CiPaw.12G041700 Carya illinoinensis HOM05D001045 ORTHO05D004836 7.6e-152 540.8 346 79.2
MD14G1158900 Malus domestica HOM05D001045 ORTHO05D004836 7.6e-152 540.8 347 78.4
CsaV3_1G000660 Cucumis sativus L. HOM05D001045 ORTHO05D004836 1.0e-151 540.4 349 78.8
Sed0018235 Sechium edule HOM05D001045 ORTHO05D004836 3.8e-151 538.5 349 77.9
Manes.14G052700 Manihot esculenta HOM05D001045 ORTHO05D004836 4.9e-151 538.1 352 77.0
Medtr4g103770 Medicago truncatula HOM05D001045 ORTHO05D004836 4.9e-151 538.1 347 78.1
Actinidia25588 Actinidia chinensis HOM05D001045 ORTHO05D004836 6.5e-151 537.7 349 78.5
FvH4_5g07980 Fragaria vesca HOM05D001045 ORTHO05D004836 6.5e-151 537.7 347 77.5
FAN18G4157 Fragaria x ananassa HOM05D001045 ORTHO05D004836 6.5e-151 537.7 347 77.5
Potri.012G095800 Populus trichocarpa HOM05D001045 ORTHO05D004836 8.4e-151 537.3 346 78.3
COL.COLO4_28086 Corchorus olitorius HOM05D001045 ORTHO05D004836 1.4e-150 536.6 347 77.8
Duzib205G1644 Durio zibethinus HOM05D001045 ORTHO05D004836 1.4e-150 536.6 347 78.1
RcHm_v2.0_Chr7g0190431 Rosa chinensis HOM05D001045 ORTHO05D004836 1.4e-150 536.6 347 77.8
arahy.Tifrunner.gnm1.ann1.B3AG7P Arachis hypogaea HOM05D001045 ORTHO05D004836 1.9e-150 536.2 382 73.6
CANSAT80G0692 Cannabis sativa HOM05D001045 ORTHO05D004836 1.9e-150 536.2 346 77.7
FAN04G1508 Fragaria x ananassa HOM05D001045 ORTHO05D004836 1.9e-150 536.2 347 77.2
MBI16_g26173_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 3.2e-150 535.4 358 76.5
Cc03_g13140 Coffea canephora HOM05D001045 ORTHO05D004836 4.2e-150 535.0 346 78.3
Sabra12G0070200 Salix brachista HOM05D001045 ORTHO05D004836 4.2e-150 535.0 348 77.6
Potri.015G093600 Populus trichocarpa HOM05D001045 ORTHO05D004836 5.5e-150 534.6 348 77.3
Sabra15G0115200 Salix brachista HOM05D001045 ORTHO05D004836 7.1e-150 534.3 365 74.2
Sc04g0000750 Simmondsia chinensis HOM05D001045 ORTHO05D004836 9.3e-150 533.9 347 76.9
Ca_00917_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 1.6e-149 533.1 347 78.4
FAN08G1251 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.7e-149 532.3 347 76.9
MBI11_g06773_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 2.7e-149 532.3 349 77.9
THA.LOC104798948 Tarenaya hassleriana HOM05D001045 ORTHO05D004836 2.7e-149 532.3 349 77.7
TWI14G1089 Tripterygium wilfordii HOM05D001045 ORTHO05D004836 3.5e-149 531.9 352 75.6
Gohir.A07G051700 Gossypium hirsutum HOM05D001045 ORTHO05D004836 4.6e-149 531.6 347 77.5
Gorai.001G059600 Gossypium raimondii HOM05D001045 ORTHO05D004836 1.8e-148 529.6 347 77.2
Gorai.003G119600 Gossypium raimondii HOM05D001045 ORTHO05D004836 3.9e-148 528.5 347 76.4
Cpa.g.sc13.140 Carica papaya HOM05D001045 ORTHO05D004836 6.7e-148 527.7 342 78.1
CAN.G352.26 Capsicum annuum HOM05D001045 ORTHO05D004836 1.1e-147 526.9 349 76.5
ATR0680G066 Amborella trichopoda HOM05D001045 ORTHO05D004836 1.5e-147 526.6 349 75.6
Peaxi162Scf00089g00522 Petunia axillaris HOM05D001045 ORTHO05D004836 1.9e-147 526.2 348 77.0
AUR62025919 Chenopodium quinoa HOM05D001045 ORTHO05D004836 2.5e-147 525.8 347 75.5
ECA240G2390 Erigeron canadensis HOM05D001045 ORTHO05D004836 2.5e-147 525.8 347 76.1
Gohir.A03G053500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.5e-147 525.8 347 75.8
MSTRG.22907 Avicennia marina HOM05D001045 ORTHO05D004836 4.3e-147 525.0 348 76.7
CDE04G0888 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 4.3e-147 525.0 346 76.6
Migut.I00512 Erythranthe guttata HOM05D001045 ORTHO05D004836 4.3e-147 525.0 346 75.7
CSS0020803 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D004836 5.7e-147 524.6 347 75.5
Solyc03g111260.3 Solanum lycopersicum HOM05D001045 ORTHO05D004836 9.7e-147 523.9 349 75.9
Sopen03g030390 Solanum pennellii HOM05D001045 ORTHO05D004836 9.7e-147 523.9 349 75.9
vmacro16670 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 1.3e-146 523.5 349 75.6
Actinidia15837 Actinidia chinensis HOM05D001045 ORTHO05D004836 1.6e-146 523.1 345 77.4
PGSC0003DMG402015244 Solanum tuberosum HOM05D001045 ORTHO05D004836 2.2e-146 522.7 349 75.9
Nitab4.5_0003680g0020 Nicotiana tabacum HOM05D001045 ORTHO05D004836 2.8e-146 522.3 348 75.6
PGR083G0639 Punica granatum HOM05D001045 ORTHO05D004836 2.8e-146 522.3 347 75.5
SGA_v2.0_scaffold215G42334 Striga asiatica HOM05D001045 ORTHO05D004836 2.8e-146 522.3 349 75.6
Gohir.D07G056200 Gossypium hirsutum HOM05D001045 ORTHO05D004836 4.8e-146 521.5 340 77.6
CDE07G0382 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 6.3e-146 521.2 342 76.6
Eucgr.B00129 Eucalyptus grandis HOM05D001045 ORTHO05D004836 6.3e-146 521.2 347 75.5
AUR62029637 Chenopodium quinoa HOM05D001045 ORTHO05D004836 1.4e-145 520.0 347 74.6
DCAR_026220 Daucus carota HOM05D001045 ORTHO05D004836 1.4e-145 520.0 347 75.8
Aqoxy3G01499 Aquilegia oxysepala HOM05D001045 ORTHO05D004836 1.8e-145 519.6 348 77.3
DCAR_016404 Daucus carota HOM05D001045 ORTHO05D004836 1.8e-145 519.6 346 75.4
Peaxi162Scf00536g00312 Petunia axillaris HOM05D001045 ORTHO05D004836 4.1e-145 518.5 348 76.1
Lj9C477G11 Lonicera japonica HOM05D001045 ORTHO05D004836 5.3e-145 518.1 340 76.5
Lsat_1_v5_gn_1_81241 Lactuca sativa HOM05D001045 ORTHO05D004836 9.0e-145 517.3 346 75.7
HanXRQChr03g0064991 Helianthus annuus HOM05D001045 ORTHO05D004836 2.0e-144 516.2 347 75.2
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 5.9e-144 514.6 347 74.6
Rhsim08G0188700 Rhododendron simsii HOM05D001045 ORTHO05D004836 7.7e-144 514.2 347 74.6
Os02g0539600 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D004836 1.0e-143 513.8 346 74.6
EL10As4g23417 Beta vulgaris HOM05D001045 ORTHO05D004836 1.3e-143 513.5 376 70.5
PSO017G5689 Papaver somniferum HOM05D001045 ORTHO05D004836 1.3e-143 513.5 348 76.7
PSO478G0896 Papaver somniferum HOM05D001045 ORTHO05D004836 1.3e-143 513.5 348 76.7
BcaC01g02587 Brassica carinata HOM05D001045 ORTHO05D004836 1.7e-143 513.1 347 74.4
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 1.7e-143 513.1 347 74.4
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 1.7e-143 513.1 347 74.4
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 1.7e-143 513.1 347 74.4
CARHR277280 Cardamine hirsuta HOM05D001045 ORTHO05D004836 2.9e-143 512.3 346 74.9
Actinidia36799 Actinidia chinensis HOM05D001045 ORTHO05D004836 3.8e-143 511.9 332 78.0
AL8G40490 Arabidopsis lyrata HOM05D001045 ORTHO05D004836 3.8e-143 511.9 346 74.6
AT5G63420 Arabidopsis thaliana HOM05D001045 ORTHO05D004836 6.5e-143 511.1 347 73.5
Hund02428 Selenicereus undatus HOM05D001045 ORTHO05D004836 8.5e-143 510.8 347 73.2
Zm00001eb234620 Zea mays HOM05D001045 ORTHO05D004836 1.9e-142 509.6 346 74.3
Carub.0008s2413 Capsella rubella HOM05D001045 ORTHO05D004836 4.2e-142 508.4 346 74.0
Sp2g26510 Schrenkiella parvula HOM05D001045 ORTHO05D004836 4.2e-142 508.4 347 73.8
Aa31LG1G18610 Aethionema arabicum HOM05D001045 ORTHO05D004836 1.2e-141 506.9 347 73.8
Oeu006361.1 Olea europaea HOM05D001045 ORTHO05D004836 1.6e-141 506.5 354 73.7
ClCG06G017790 Citrullus lanatus HOM05D001045 ORTHO05D004836 3.6e-141 505.4 349 74.2
Thhalv10003624m.g Eutrema salsugineum HOM05D001045 ORTHO05D004836 1.0e-140 503.8 347 74.1
HPP92_008938 Vanilla planifolia HOM05D001045 ORTHO05D004836 1.4e-140 503.4 346 72.0
MELO3C026230.2 Cucumis melo HOM05D001045 ORTHO05D004836 2.0e-139 499.6 359 71.6
Nitab4.5_0003005g0050 Nicotiana tabacum HOM05D001045 ORTHO05D004836 9.7e-139 497.3 311 78.5
QL10p004182 Quercus lobata HOM05D001045 ORTHO05D004836 6.3e-130 468.0 284 80.6
Ah.11g045420 Amaranthus hybridus HOM05D001045 ORTHO05D004836 1.8e-129 466.5 347 68.9
Mapoly0037s0113 Marchantia polymorpha HOM05D001045 ORTHO05D004836 2.2e-127 459.5 346 66.8
vmacro19213 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.1e-125 453.0 400 63.0
Pp3c20_9790 Physcomitrium patens HOM05D001045 ORTHO05D004836 4.7e-125 451.8 347 65.1
AagrBONN_evm.TU.Sc2ySwM_369.157 Anthoceros agrestis HOM05D001045 ORTHO05D004836 4.4e-123 445.3 346 63.6
SMO141G0105 Selaginella moellendorffii HOM05D001045 ORTHO05D004836 1.8e-121 439.9 347 62.2
Dinv04873 Davidia involucrata HOM05D001045 ORTHO05D004836 5.0e-119 431.8 290 77.2
TAR371G0766 Trochodendron aralioides HOM05D001045 ORTHO05D004836 7.2e-118 427.9 288 75.7
unitig_27.g25101 Utricularia gibba HOM05D001045 ORTHO05D004836 7.5e-115 417.9 347 65.1
MCO10G193 Micromonas commoda HOM05D001045 ORTHO05D004836 1.7e-95 353.6 325 53.8
Cre16.g683050 Chlamydomonas reinhardtii HOM05D001045 ORTHO05D004836 3.9e-95 352.4 325 55.7
TPR.G26154 Trifolium pratense HOM05D001045 ORTHO05D004836 8.6e-95 351.3 214 84.1
Gohir.D03G113500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.0e-91 340.1 214 79.0
Phvul.009G167400 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 8.3e-90 334.7 204 84.8
PRCOL_00002539 Prasinoderma coloniale HOM05D001045 ORTHO05D004836 5.4e-89 332.0 325 51.7
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 7.3e-86 321.6 207 78.3
Zm00001eb206430 Zea mays HOM05D001045 ORTHO05D004836 1.6e-85 320.5 214 74.8
CBR_g16830 Chara braunii HOM05D001045 ORTHO05D004836 2.1e-85 320.1 346 49.4
VMungo1309G1845 Vigna mungo HOM05D001045 ORTHO05D004836 1.4e-81 307.4 166 92.2
TPR.G27530 Trifolium pratense HOM05D001045 ORTHO05D004836 1.1e-54 218.0 105 94.3
VMungo1309G1120 Vigna mungo HOM05D001045 ORTHO05D004836 1.1e-54 218.0 104 96.2
SEGI_01988 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 3.8e-50 203.0 162 61.1
SEGI_07350 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 6.7e-47 192.2 105 77.1
Pp3s42_180 Physcomitrium patens HOM05D001045 ORTHO05D044363 1.9e-41 174.1 301 33.9
FAN18G0261 Fragaria x ananassa HOM05D001045 ORTHO05D004836 9.3e-33 145.2 103 74.8
SEGI_30926 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 1.2e-32 144.8 87 82.8
FAN11G2378 Fragaria x ananassa HOM05D001045 ORTHO05D029595 1.8e-28 131.0 112 66.1
Hma1.2p1_0014F.1_g009640 Hydrangea macrophylla HOM05D001045 ORTHO05D004836 4.2e-25 119.8 63 88.9
FAN16G0247 Fragaria x ananassa HOM05D001045 ORTHO05D029595 6.1e-24 115.9 72 81.9
TPR.G30015 Trifolium pratense HOM05D001045 ORTHO05D004836 1.2e-16 91.7 77 67.5
FvH4_3g39050 Fragaria vesca HOM05D001045 ORTHO05D029595 1.0e-15 88.6 96 57.3
FvH4_5g08040 Fragaria vesca HOM05D001045 ORTHO05D004836 7.0e-12 75.9 61 67.2
Dinv04872 Davidia involucrata HOM05D001045 ORTHO05D004836 7.7e-11 72.4 37 91.9
FAN21G1459 Fragaria x ananassa HOM05D001045 ORTHO05D029595 1.0e-10 72.0 86 50.0
VMungo1080G0823 Vigna mungo HOM05D001045 ORTHO05D008141 2.1e-08 64.3 67 47.8


User provided reference genes

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