Gene: Sopen03g030390

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g030390
  • Transcript Identifier Sopen03g030390.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 66083040-66095793 : positive

Gene Family Information

  • ID HOM05D001045
  • #Genes/#Species 581/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g030390.1

Descriptions

  • Description embryo defective 2746 (emb2746) | FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity | INVOLVED IN: metabolic process, embryo development ending in seed dormancy | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SANT, DNA-binding , RNA-metabolising metallo-beta-lactamase , Beta-lactamase-like , MYB-like | BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060918
ISO
PLAZA Integrative Orthologyauxin transport AT5G63420
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G63420
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT5G63420
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT5G63420
GO:0006414
ISO
PLAZA Homology (enrichment)translational elongation HOM05D001045
GO:0009942
ISO
PLAZA Integrative Orthologylongitudinal axis specification AT5G63420

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008409
ISO
PLAZA Integrative Orthology5'-3' exonuclease activity AT5G63420
GO:0003746
ISO
PLAZA Homology (enrichment)translation elongation factor activity HOM05D001045
GO:0004519
ISO
PLAZA Integrative Orthologyendonuclease activity AT5G63420
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G63420

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G63420

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
IPR044822 Myb/SANT-like DNA-binding domain 4
IPR042173 Ribonuclease J, domain 2
IPR001279 Metallo-beta-lactamase
Mapman id Description
16.11.1.4 RNA processing.organelle machinery.ribonuclease activities.exo-/endoribonuclease (RNase J)