Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.7e-269 931.4 470 100.0
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.7e-269 931.4 470 100.0
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.0e-199 700.3 468 76.1
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.3e-198 695.3 464 77.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 8.1e-197 690.6 467 76.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.5e-195 686.4 468 75.9
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.8e-194 681.8 467 76.7
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 3.2e-193 678.7 465 75.7
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.3e-186 656.8 464 74.6
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 6.0e-184 647.9 458 74.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 8.1e-181 637.5 473 71.5
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 4.9e-178 628.2 470 69.4
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 6.4e-178 627.9 468 69.2
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-177 627.1 473 72.3
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.2e-177 625.2 465 71.0
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 2.1e-176 622.9 467 69.8
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.6e-176 621.7 465 70.5
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 7.9e-176 620.9 470 69.4
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.3e-175 619.4 461 69.2
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.9e-174 616.3 472 69.3
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 4.3e-174 615.1 473 68.9
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.4e-174 614.4 470 68.3
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.8e-173 612.5 471 68.2
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.7e-173 612.1 471 68.4
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 4.8e-173 611.7 470 68.9
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-172 610.5 471 68.2
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 3.1e-172 609.0 453 72.4
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.0e-171 606.3 478 66.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.0e-171 606.3 465 69.7
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-170 603.6 464 69.6
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.9e-170 602.4 465 66.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 4.9e-170 601.7 467 66.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 6.4e-170 601.3 464 67.5
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.6e-168 596.7 472 65.9
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.7e-168 595.9 471 67.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.0e-167 594.0 471 66.7
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.8e-167 593.2 464 68.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.9e-167 592.0 479 67.0
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.1e-166 590.5 464 65.9
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 5.6e-166 588.2 470 65.1
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 5.6e-166 588.2 466 67.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.7e-165 585.5 470 67.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.4e-164 583.6 465 65.2
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-163 579.7 479 66.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.6e-163 579.3 453 67.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.5e-163 578.6 451 68.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 4.5e-163 578.6 472 64.4
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.8e-163 578.2 470 65.1
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.0e-162 577.4 469 65.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 8.4e-162 574.3 476 64.7
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.4e-161 573.5 465 65.2
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 4.2e-161 572.0 473 63.2
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 5.5e-161 571.6 464 64.7
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 9.3e-161 570.9 467 64.9
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.6e-160 570.1 455 65.5
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.6e-160 570.1 465 63.9
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.1e-160 569.7 460 64.3
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.0e-159 567.4 455 65.1
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 3.0e-159 565.8 464 63.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 5.1e-159 565.1 462 63.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.1e-158 563.9 462 64.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.3e-158 562.4 455 64.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 7.4e-158 561.2 462 64.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 6.3e-157 558.1 468 63.7
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.1e-156 557.4 455 64.8
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.1e-156 557.4 462 64.9
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 5.3e-156 555.1 467 64.5
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-155 553.9 466 63.1
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 2.0e-155 553.1 458 64.2
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.3e-154 550.4 455 63.7
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 8.5e-154 547.7 526 59.9
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 7.2e-153 544.7 455 63.7
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.2e-152 543.9 418 68.7
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.0e-151 540.8 455 63.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 1.4e-151 540.4 467 63.6
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.3e-151 539.7 542 56.6
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 9.7e-150 534.3 467 60.6
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.8e-149 532.7 471 60.9
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 5.3e-148 528.5 478 61.1
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.0e-146 524.2 487 61.0
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 6.5e-146 521.5 466 60.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 3.2e-145 519.2 460 62.2
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.6e-144 515.8 465 60.2
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 3.0e-143 512.7 432 63.9
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 7.4e-142 508.1 458 61.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.2e-141 506.5 482 57.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 5.3e-140 501.9 482 60.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.1e-137 494.2 466 59.0
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.8e-135 486.9 469 56.7
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.3e-135 486.5 435 62.1
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 4.4e-134 482.3 287 85.0
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 4.5e-131 472.2 372 68.0
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 5.9e-131 471.9 465 55.3
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.2e-126 457.6 485 53.6
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 4.8e-125 452.2 442 56.3
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.1e-124 449.5 443 55.3
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.2e-123 447.6 380 61.6
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 4.2e-121 439.1 471 54.8
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 4.8e-117 425.6 475 52.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.3e-117 425.2 281 75.4
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.6e-112 410.6 459 49.5
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.8e-112 409.8 266 76.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 4.0e-111 406.0 447 52.3
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 2.0e-110 403.7 267 74.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 4.4e-110 402.5 454 52.9
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.9e-109 399.1 426 52.3
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 4.1e-108 396.0 347 60.8
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 6.6e-106 388.7 321 65.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.4e-100 369.0 241 75.9
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-94 350.5 332 59.0
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.7e-93 347.4 286 66.4
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.6e-91 340.9 435 47.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 2.1e-91 340.5 371 52.6
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 3.6e-88 329.7 508 41.3
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.7e-80 302.8 296 60.8
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.5e-73 280.4 284 57.4
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 9.0e-71 271.9 298 52.3
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.0e-66 258.5 271 52.4
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.1e-63 246.9 264 53.8
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.6e-57 226.1 221 57.0
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 2.8e-56 223.8 227 55.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 2.7e-51 207.2 217 53.9
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 8.7e-50 202.2 436 36.2
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 5.3e-47 193.0 271 40.2
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.5e-46 191.4 295 40.3
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.0e-45 188.7 136 62.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.2e-43 181.8 173 56.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 3.0e-42 177.2 272 39.0
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.0e-38 164.5 123 68.3
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 7.7e-38 162.5 115 74.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.4e-36 158.3 103 73.8
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.5e-33 148.3 72 94.4
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.1e-28 132.1 87 70.1
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.4e-26 125.2 87 64.4
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-25 122.1 103 62.1
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 3.7e-24 117.1 67 88.1
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.8e-23 114.8 293 28.3
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 3.5e-22 110.5 93 60.2
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.6e-17 94.4 69 71.0
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.3e-16 92.0 205 34.6
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.2e-13 81.3 81 56.8
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.9e-13 80.9 59 64.4
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.1e-11 74.7 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.7e-11 73.6 205 31.2
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 7.5e-09 66.2 37 89.2
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 4.5e-06 57.0 128 39.1


User provided reference genes

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