Gene: Solyc01g096910.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g096910.3
- Transcript Identifier Solyc01g096910.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 80168883-80177299 : negative
Gene Family Information
- ID HOM05D005149
- #Genes/#Species 146/100
- Phylogenetic origin
- ID ORTHO05D006251
- #Genes/#Species 145/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc01g096910.3.1
- uniprot A0A3Q7EM91
- gene_id Solyc01g096910
Descriptions
- Description Vacuolar protein sorting-associated protein 36 (AHRD V3.3 *** A0A2G3BTR2_CAPCH),Pfam:PF04157
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0032509 | IEA | GOA Database | endosome transport via multivesicular body sorting pathway | |
GO:0032509 | IEA | InterPro | endosome transport via multivesicular body sorting pathway | |
GO:0071985 | ISO | PLAZA Integrative Orthology | multivesicular body sorting pathway | AT5G04920 |
GO:0090351 | ISO | PLAZA Integrative Orthology | seedling development | AT5G04920 |
GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G04920 |
GO:0007033 | ISO | PLAZA Integrative Orthology | vacuole organization | AT5G04920 |
GO:0043328 | IBA IEA | GOA Database | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | |
GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G04920 |
GO:0043130 | IBA IEA | GOA Database | ubiquitin binding | |
GO:0043130 | IEA | InterPro | ubiquitin binding | |
GO:0032266 | IEA | GOA Database | phosphatidylinositol-3-phosphate binding | |
GO:0032266 | IEA | InterPro | phosphatidylinositol-3-phosphate binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT5G04920 |
GO:0005770 | ISO | PLAZA Integrative Orthology | late endosome | AT5G04920 |
GO:0005769 | ISO | PLAZA Integrative Orthology | early endosome | AT5G04920 |
GO:0031902 | IBA IEA | GOA Database | late endosome membrane | |
GO:0000814 | IBA IEA | GOA Database | ESCRT II complex | |
GO:0000814 | IEA | InterPro | ESCRT II complex | |
GO:0005768 | IEA | GOA Database | endosome | |
GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR037855 | Vacuolar protein sorting protein 36 |
IPR011993 | PH-like domain superfamily |
IPR036388 | Winged helix-like DNA-binding domain superfamily |
IPR036390 | Winged helix DNA-binding domain superfamily |
IPR021648 | Vacuolar protein sorting protein 36, GLUE domain |
IPR040608 | Snf8/Vps36 family |
Mapman id | Description |
---|---|
22.4.1.2.3 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-II complex.component VPS36 |