Gene: COL.COLO4_28905

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_28905
  • Transcript Identifier COL.rna27623
  • Gene Type Coding gene
  • Location AWUE01020129.1 : 4972-6585 : positive

Gene Family Information

  • ID HOM05D005149
  • #Genes/#Species 146/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna27623
  • GenBank OMO69845.1
  • id gene28877
  • gene_name COLO4_28905
  • uniprot A0A1R3HHU5

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032509
IEA
GOA Databaseendosome transport via multivesicular body sorting pathway
GO:0032509
IEA
InterProendosome transport via multivesicular body sorting pathway
GO:0071985
ISO
PLAZA Integrative Orthologymultivesicular body sorting pathway AT5G04920
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT5G04920
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G04920
GO:0007033
ISO
PLAZA Integrative Orthologyvacuole organization AT5G04920
GO:0043328
IEA
GOA Databaseprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G04920
GO:0043130
IEA
GOA Databaseubiquitin binding
GO:0043130
IEA
InterProubiquitin binding
GO:0032266
IEA
GOA Databasephosphatidylinositol-3-phosphate binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G04920
GO:0005770
ISO
PLAZA Integrative Orthologylate endosome AT5G04920
GO:0005769
ISO
PLAZA Integrative Orthologyearly endosome AT5G04920
GO:0000814
IEA
GOA DatabaseESCRT II complex
GO:0000814
IEA
InterProESCRT II complex
GO:0005768
IEA
GOA Databaseendosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0031902
IEA
GOA Databaselate endosome membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037855 Vacuolar protein sorting protein 36
IPR036390 Winged helix DNA-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
22.4.1.2.3 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-II complex.component VPS36