Gene: AT5G04920
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G04920
- Transcript Identifier AT5G04920.1
- Gene Type Coding gene
- Location Chr5 : 1439172-1441545 : negative
Gene Family Information
- ID HOM05D005149
- #Genes/#Species 146/100
- Phylogenetic origin
- ID ORTHO05D006251
- #Genes/#Species 145/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G04920.1
- uniprot Q9FF81
Descriptions
- Description EAP30/Vps36 family protein
- Computational description EAP30/Vps36 family protein; CONTAINS InterPro DOMAIN/s: EAP30 (InterPro:IPR007286), Vacuolar protein sorting protein, Vps36 (InterPro:IPR021648); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032509 | IEA | GOA Database | endosome transport via multivesicular body sorting pathway | |
| GO:0032509 | IEA | InterPro | endosome transport via multivesicular body sorting pathway | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0043328 | IBA | Gene Ontology | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 1 |
| GO:0090351 | IMP | Gene Ontology | seedling development | 2 |
| GO:0071985 | IMP | Gene Ontology | multivesicular body sorting pathway | 2 |
| GO:0009793 | IMP | Gene Ontology | embryo development ending in seed dormancy | 2 |
| GO:0007033 | IMP | Gene Ontology | vacuole organization | 2 |
| GO:0016192 | ISS | Gene Ontology | vesicle-mediated transport | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043130 | IEA | GOA Database | ubiquitin binding | |
| GO:0043130 | IDA IBA | Gene Ontology | ubiquitin binding | 1 2 |
| GO:0043130 | IEA | InterPro | ubiquitin binding | |
| GO:0032266 | IEA | Gene Ontology | phosphatidylinositol-3-phosphate binding | |
| GO:0032266 | IEA | InterPro | phosphatidylinositol-3-phosphate binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000814 | IEA | GOA Database | ESCRT II complex | |
| GO:0000814 | ISS, IBA | Gene Ontology | ESCRT II complex | 1 5 |
| GO:0000814 | IEA | InterPro | ESCRT II complex | |
| GO:0005768 | IEA | GOA Database | endosome | |
| GO:0031902 | IBA | Gene Ontology | late endosome membrane | 1 |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005886 | IDA | Gene Ontology | plasma membrane | 2 |
| GO:0005770 | IDA | Gene Ontology | late endosome | 2 |
| GO:0005769 | IDA | Gene Ontology | early endosome | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR037855 | Vacuolar protein sorting protein 36 |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR021648 | Vacuolar protein sorting protein 36, GLUE domain |
| IPR040608 | Snf8/Vps36 family |
| IPR011993 | PH-like domain superfamily |
| Mapman id | Description |
|---|---|
| 22.4.1.2.3 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-II complex.component VPS36 |