Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.7e-175 618.6 321 100.0
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 9.5e-173 610.1 321 98.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.5e-154 549.7 328 85.7
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.8e-154 547.7 328 85.1
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 7.5e-154 547.4 326 85.3
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.2e-152 542.0 326 84.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.5e-151 538.5 328 83.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-150 536.6 321 84.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.9e-149 532.7 328 83.2
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.3e-149 531.9 329 82.1
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.3e-149 531.6 329 81.8
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 7.6e-138 494.2 329 75.7
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.3e-137 493.4 326 76.1
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.4e-137 491.1 325 76.6
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.4e-136 490.0 324 76.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 3.2e-136 488.8 325 76.3
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.1e-135 486.1 320 74.4
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 3.5e-135 485.3 328 74.7
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-134 483.4 327 74.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.9e-134 481.9 328 74.1
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 8.7e-134 480.7 328 73.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 4.3e-133 478.4 326 73.0
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.6e-132 476.5 328 74.4
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.8e-132 475.7 331 71.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 3.6e-132 475.3 324 73.1
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.2e-132 474.6 328 73.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 8.1e-132 474.2 352 70.5
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.4e-131 473.4 322 73.3
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.8e-131 473.0 326 72.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.8e-131 473.0 328 72.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.0e-131 471.9 329 72.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.2e-130 470.3 328 73.2
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-130 470.3 328 73.2
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.2e-130 470.3 330 72.1
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.0e-130 469.5 326 70.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.0e-130 469.5 328 72.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.0e-130 469.5 331 73.4
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.6e-130 469.2 326 71.8
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.5e-130 468.4 321 72.6
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 4.5e-130 468.4 324 73.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 5.8e-130 468.0 345 69.9
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.7e-129 466.5 330 72.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 4.9e-129 464.9 326 72.1
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.4e-128 463.4 323 74.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.2e-128 461.8 318 73.9
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.6e-127 459.9 321 71.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-127 459.5 325 73.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.7e-127 459.1 323 73.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.6e-127 458.4 323 72.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.0e-127 458.0 323 73.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.1e-125 453.8 326 69.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.6e-125 451.4 328 68.6
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-124 450.3 323 71.8
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.3e-124 450.3 323 71.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.6e-124 449.9 328 68.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.8e-124 448.4 359 65.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 6.2e-124 448.0 397 62.0
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.4e-123 446.8 293 75.4
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.0e-123 445.3 323 70.9
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 9.0e-123 444.1 320 69.4
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 69.9
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.2e-122 443.7 323 70.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.2e-122 443.7 322 71.4
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.2e-122 443.7 321 70.1
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.5e-122 443.4 328 73.5
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.5e-122 443.4 326 68.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.0e-122 443.0 329 69.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 4.5e-122 441.8 320 71.2
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 4.5e-122 441.8 362 64.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.6e-122 441.0 327 70.0
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.2e-121 439.5 327 69.7
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.9e-121 439.1 321 69.2
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.9e-121 439.1 327 69.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.6e-119 433.3 327 68.8
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.7e-119 432.6 327 68.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.5e-119 432.2 330 65.8
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 6.0e-119 431.4 327 68.8
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.0e-118 430.6 321 69.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-118 430.6 318 70.8
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.8e-118 429.9 320 67.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.9e-118 428.7 330 67.9
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 5.1e-118 428.3 322 67.4
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.7e-118 427.9 327 66.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.1e-117 427.2 322 65.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.7e-116 422.2 320 66.2
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.7e-116 422.2 328 67.4
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 4.8e-116 421.8 322 67.7
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.4e-115 420.2 322 65.8
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.8e-115 419.9 322 66.1
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.8e-115 419.9 322 65.8
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.1e-115 419.1 321 67.3
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 6.9e-115 417.9 332 63.6
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 6.9e-115 417.9 322 65.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.2e-114 417.2 322 65.8
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 7.6e-114 414.5 323 68.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 7.6e-114 414.5 276 75.0
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.0e-113 414.1 320 65.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-113 413.3 321 65.4
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.7e-113 413.3 323 65.6
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.4e-112 410.2 321 64.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-112 409.8 323 67.5
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.3e-109 399.1 321 64.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.6e-106 389.4 272 71.7
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 4.6e-103 378.6 333 60.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 8.8e-102 374.4 322 59.0
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.1e-99 365.5 327 59.9
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.6e-98 362.8 317 63.7
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.2e-97 359.8 320 60.3
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.7e-92 342.4 324 59.3
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.8e-89 332.4 312 57.4
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.9e-88 330.1 322 55.6
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.2e-88 329.3 322 56.2
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.1e-87 325.1 312 57.4
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 5.7e-85 318.5 324 54.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.6e-82 309.7 276 59.8
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.8e-78 295.0 318 48.1
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.4e-75 287.3 176 79.5
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 6.5e-73 278.5 316 48.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 3.2e-72 276.2 195 70.3
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 8.0e-71 271.6 185 74.1
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.4e-69 266.2 320 49.1
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.9e-64 250.4 279 44.1
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 9.8e-61 238.0 214 59.3
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-60 236.5 193 64.8
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-59 233.4 317 45.7
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 4.1e-59 232.6 142 80.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 3.9e-57 226.1 272 49.3
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.3e-56 223.0 290 43.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.8e-54 215.3 157 68.8
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.8e-54 215.3 131 83.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.4e-51 206.8 133 76.7
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.0e-50 203.8 177 59.9
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.7e-44 184.1 139 61.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.2e-44 183.7 117 77.8
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 6.4e-44 182.2 146 63.0
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.2e-42 177.9 131 65.6
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 6.0e-42 175.6 94 86.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 2.3e-41 173.7 263 39.5
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 9.5e-40 168.3 128 67.2
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.6e-39 166.4 178 51.1
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.1e-38 164.9 224 43.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.4e-36 155.6 256 35.2
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.1e-35 152.9 142 54.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.7e-33 147.5 153 52.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 6.6e-33 145.6 137 53.3
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.9e-32 144.1 82 85.4
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.3e-32 143.3 196 41.8
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-31 141.0 140 52.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.9e-29 131.7 213 40.4
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.1e-27 128.3 131 48.1
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.7e-26 123.6 188 43.1
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 3.5e-26 123.2 185 38.9
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.6e-24 115.9 117 50.4
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 5.6e-24 115.9 68 85.3
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-16 91.3 94 54.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-16 91.3 94 54.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.6e-15 87.8 94 52.1
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.2e-13 81.6 115 45.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-13 81.6 59 71.2
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-09 68.2 60 60.0
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 6.7e-09 65.9 56 58.9


User provided reference genes

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