Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KI1FZN Arachis hypogaea HOM05D001090 ORTHO05D006167 4.1e-117 424.9 231 100.0
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 1.4e-101 373.2 340 67.1
arahy.Tifrunner.gnm1.ann1.XGP1KG Arachis hypogaea HOM05D001090 ORTHO05D006167 1.4e-101 373.2 340 67.1
Lj1g0021730 Lotus japonicus HOM05D001090 ORTHO05D006167 3.4e-79 298.9 342 53.2
Glyma.19G221300 Glycine max HOM05D001090 ORTHO05D006167 4.1e-77 292.0 342 53.2
Glyma.03G224400 Glycine max HOM05D001090 ORTHO05D006167 3.5e-76 288.9 342 52.6
Phvul.001G218200 Phaseolus vulgaris HOM05D001090 ORTHO05D006167 3.6e-73 278.9 342 51.8
Cfa004911 Carpinus fangiana HOM05D001090 ORTHO05D006167 8.9e-72 274.2 345 48.4
Dinv12082 Davidia involucrata HOM05D001090 ORTHO05D006167 1.2e-71 273.9 344 48.5
Haze_05146 Corylus avellana HOM05D001090 ORTHO05D006167 5.8e-71 271.6 346 48.0
Manes.05G009100 Manihot esculenta HOM05D001090 ORTHO05D006167 7.5e-71 271.2 344 50.9
Potri.002G187100 Populus trichocarpa HOM05D001090 ORTHO05D006167 9.8e-71 270.8 344 48.0
Potri.014G112600 Populus trichocarpa HOM05D001090 ORTHO05D006167 1.9e-69 266.5 344 48.5
Ciclev10018812m.g Citrus clementina HOM05D001090 ORTHO05D006167 2.4e-69 266.2 344 49.1
TWI23G1021 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 2.4e-69 266.2 347 47.0
GSVIVG01028251001 Vitis vinifera HOM05D001090 ORTHO05D006167 2.4e-69 266.2 344 47.1
Atru.chr5.863 Acer truncatum HOM05D001090 ORTHO05D006167 9.2e-69 264.2 344 47.4
Ca_09245_v3 Cicer arietinum L. HOM05D001090 ORTHO05D006167 1.2e-68 263.8 341 49.6
Sabra14G0082800 Salix brachista HOM05D001090 ORTHO05D006167 3.5e-68 262.3 344 48.8
Manes.01G235000 Manihot esculenta HOM05D001090 ORTHO05D006167 4.6e-68 261.9 345 49.6
PGR142G4102 Punica granatum HOM05D001090 ORTHO05D006167 3.0e-67 259.2 345 47.0
vmacro02360 Vaccinium macrocarpon HOM05D001090 ORTHO05D006167 8.6e-67 257.7 345 49.0
Rhsim01G0000300 Rhododendron simsii HOM05D001090 ORTHO05D006167 1.9e-66 256.5 345 47.0
Psat3g016720 Pisum sativum HOM05D001090 ORTHO05D006167 5.6e-66 255.0 339 50.1
TWI59G0772 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 7.3e-66 254.6 346 45.7
CANSAT25G3150 Cannabis sativa HOM05D001090 ORTHO05D006167 1.2e-65 253.8 343 47.2
Solyc01g080850.4 Solanum lycopersicum HOM05D001090 ORTHO05D006167 2.8e-65 252.7 346 47.1
Sopen01g030630 Solanum pennellii HOM05D001090 ORTHO05D006167 2.8e-65 252.7 346 47.1
Sabra02G0129700 Salix brachista HOM05D001090 ORTHO05D006167 3.6e-65 252.3 344 45.9
Eucgr.K00564 Eucalyptus grandis HOM05D001090 ORTHO05D006167 6.8e-64 248.1 295 49.8
Medtr7g110640 Medicago truncatula HOM05D001090 ORTHO05D006167 6.8e-64 248.1 341 49.9
Peaxi162Scf00309g00913 Petunia axillaris HOM05D001090 ORTHO05D006167 6.8e-64 248.1 346 46.2
CAN.G100.57 Capsicum annuum HOM05D001090 ORTHO05D006167 4.4e-63 245.4 345 46.4
Duzib138G0040 Durio zibethinus HOM05D001090 ORTHO05D006167 4.4e-63 245.4 334 46.7
Gorai.007G117000 Gossypium raimondii HOM05D001090 ORTHO05D006167 4.4e-63 245.4 346 47.1
TAR365G0940 Trochodendron aralioides HOM05D001090 ORTHO05D006167 9.8e-63 244.2 293 49.8
Gohir.D11G109400 Gossypium hirsutum HOM05D001090 ORTHO05D006167 2.2e-62 243.0 346 46.8
COL.COLO4_23131 Corchorus olitorius HOM05D001090 ORTHO05D006167 1.4e-61 240.4 340 45.9
QL12p034939 Quercus lobata HOM05D001090 ORTHO05D006167 1.4e-61 240.4 347 47.3
Nitab4.5_0003092g0010 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.9e-61 240.0 340 47.6
Prupe.3G002800 Prunus persica HOM05D001090 ORTHO05D006167 1.9e-61 240.0 345 46.7
MSTRG.15096 Avicennia marina HOM05D001090 ORTHO05D006167 4.1e-61 238.8 343 46.4
Nitab4.5_0000222g0360 Nicotiana tabacum HOM05D001090 ORTHO05D006167 4.1e-61 238.8 342 48.2
Thecc.01G325100 Theobroma cacao HOM05D001090 ORTHO05D006167 4.1e-61 238.8 345 45.5
TPR.G2501 Trifolium pratense HOM05D001090 ORTHO05D006167 4.1e-61 238.8 343 48.4
FvH4_1g26250 Fragaria vesca HOM05D001090 ORTHO05D006167 7.0e-61 238.0 341 45.5
FAN26G0681 Fragaria x ananassa HOM05D001090 ORTHO05D006167 7.0e-61 238.0 350 44.0
SGA_v2.0_scaffold198G41106 Striga asiatica HOM05D001090 ORTHO05D006167 1.6e-60 236.9 299 48.5
RcHm_v2.0_Chr3g0485911 Rosa chinensis HOM05D001090 ORTHO05D006167 4.6e-60 235.3 303 48.2
Gohir.A12G120100 Gossypium hirsutum HOM05D001090 ORTHO05D006167 6.0e-60 235.0 340 45.3
FAN23G2339 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.0e-59 234.2 341 44.9
THA.LOC104801326 Tarenaya hassleriana HOM05D001090 ORTHO05D006167 1.7e-59 233.4 351 43.9
Gohir.A11G104600 Gossypium hirsutum HOM05D001090 ORTHO05D006167 2.3e-59 233.0 346 45.7
Sc17g0000010 Simmondsia chinensis HOM05D001090 ORTHO05D006167 5.1e-59 231.9 337 43.6
Dinv33168 Davidia involucrata HOM05D001090 ORTHO05D006167 1.1e-58 230.7 345 44.3
FAN28G2823 Fragaria x ananassa HOM05D001090 ORTHO05D006167 5.6e-58 228.4 350 43.4
Migut.N00921 Erythranthe guttata HOM05D001090 ORTHO05D006167 7.3e-58 228.0 348 44.3
Sed0008475 Sechium edule HOM05D001090 ORTHO05D006167 7.3e-58 228.0 342 44.4
MD17G1284900 Malus domestica HOM05D001090 ORTHO05D006167 6.2e-57 224.9 352 43.2
MD09G1290300 Malus domestica HOM05D001090 ORTHO05D006167 8.1e-57 224.6 352 42.6
Duzib133G1021 Durio zibethinus HOM05D001090 ORTHO05D006167 1.4e-56 223.8 343 43.7
VMungo1383G1946 Vigna mungo HOM05D001090 ORTHO05D006167 2.3e-56 223.0 344 48.3
Carub.0006s3541 Capsella rubella HOM05D001090 ORTHO05D006167 3.1e-56 222.6 349 43.8
AL6G51490 Arabidopsis lyrata HOM05D001090 ORTHO05D006167 5.2e-56 221.9 345 42.9
DCAR_002936 Daucus carota HOM05D001090 ORTHO05D006167 6.8e-56 221.5 379 40.4
AT4G01810 Arabidopsis thaliana HOM05D001090 ORTHO05D006167 1.5e-55 220.3 347 42.7
Lalb_Chr04g0260211 Lupinus albus HOM05D001090 ORTHO05D006167 3.4e-55 219.2 351 46.2
Gohir.D12G123700 Gossypium hirsutum HOM05D001090 ORTHO05D006167 4.4e-55 218.8 340 45.6
Gorai.008G134800 Gossypium raimondii HOM05D001090 ORTHO05D006167 4.4e-55 218.8 340 45.6
Nn4g25350 Nelumbo nucifera HOM05D001090 ORTHO05D006167 1.3e-54 217.2 344 44.2
Lj1A8G48 Lonicera japonica HOM05D001090 ORTHO05D006167 1.4e-53 213.8 347 43.5
Actinidia25871 Actinidia chinensis HOM05D001090 ORTHO05D006167 4.1e-53 212.2 344 43.9
Oeu038075.1 Olea europaea HOM05D001090 ORTHO05D006167 4.1e-53 212.2 258 48.8
Cc01_g21790 Coffea canephora HOM05D001090 ORTHO05D006167 1.0e-51 207.6 328 41.5
Sp6g01660 Schrenkiella parvula HOM05D001090 ORTHO05D006167 3.3e-50 202.6 349 41.3
CARHR249790 Cardamine hirsuta HOM05D001090 ORTHO05D006167 5.6e-50 201.8 349 41.3
Lalb_Chr02g0147141 Lupinus albus HOM05D001090 ORTHO05D006167 8.1e-49 198.0 344 41.6
Lalb_Chr18g0046391 Lupinus albus HOM05D001090 ORTHO05D006167 6.8e-48 194.9 356 42.1
Aa31LG5G1560 Aethionema arabicum HOM05D001090 ORTHO05D002687 8.9e-48 194.5 348 39.7
A09p01300 Brassica napus HOM05D001090 ORTHO05D006167 8.9e-48 194.5 348 40.8
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 2.6e-47 193.0 339 38.1
BraA09t35795Z Brassica rapa HOM05D001090 ORTHO05D006167 3.4e-47 192.6 348 40.5
MELO3C011813.2 Cucumis melo HOM05D001090 ORTHO05D006167 4.4e-47 192.2 258 44.2
C09p01350 Brassica napus HOM05D001090 ORTHO05D006167 1.7e-46 190.3 348 40.2
BcaB01g02111 Brassica carinata HOM05D001090 ORTHO05D006167 3.8e-46 189.1 348 39.7
PSO761G0494 Papaver somniferum HOM05D001090 ORTHO05D006167 3.8e-46 189.1 324 41.7
BcaC04g24072 Brassica carinata HOM05D001090 ORTHO05D006167 6.4e-46 188.3 348 39.9
BolC9t53069H Brassica oleracea HOM05D001090 ORTHO05D006167 6.4e-46 188.3 348 39.9
PSO210G7365 Papaver somniferum HOM05D001090 ORTHO05D006167 1.4e-45 187.2 288 43.4
AUR62042130 Chenopodium quinoa HOM05D001090 ORTHO05D006167 3.2e-45 186.0 298 41.6
AUR62042131 Chenopodium quinoa HOM05D001090 ORTHO05D006167 3.2e-45 186.0 298 41.6
DCAR_005717 Daucus carota HOM05D001090 ORTHO05D006167 4.2e-45 185.7 275 42.9
Hund11624 Selenicereus undatus HOM05D001090 ORTHO05D006167 1.2e-44 184.1 267 43.4
Lsat_1_v5_gn_8_125581 Lactuca sativa HOM05D001090 ORTHO05D006167 4.6e-44 182.2 341 41.6
ECA233G3948 Erigeron canadensis HOM05D001090 ORTHO05D006167 2.3e-43 179.9 335 37.6
Aqoxy5G02821 Aquilegia oxysepala HOM05D001090 ORTHO05D006167 3.0e-43 179.5 344 36.6
ClCG11G013170 Citrullus lanatus HOM05D001090 ORTHO05D006167 1.1e-42 177.6 339 36.3
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 4.3e-42 175.6 344 39.2
Ah.15g091800 Amaranthus hybridus HOM05D001090 ORTHO05D006167 5.6e-42 175.3 334 38.6
Nn3g21945 Nelumbo nucifera HOM05D001090 ORTHO05D006167 2.1e-41 173.3 344 36.9
Thhalv10028421m.g Eutrema salsugineum HOM05D001090 ORTHO05D006167 4.7e-41 172.2 348 38.5
AUR62040321 Chenopodium quinoa HOM05D001090 ORTHO05D006167 6.9e-40 168.3 206 51.0
HPP92_015635 Vanilla planifolia HOM05D001090 ORTHO05D006167 1.2e-39 167.5 282 40.1
Zm00001eb340490 Zea mays HOM05D001090 ORTHO05D006167 5.8e-39 165.2 291 35.7
EL10Ac7g17290 Beta vulgaris HOM05D001090 ORTHO05D006167 2.2e-38 163.3 292 39.7
CiPaw.08G082800 Carya illinoinensis HOM05D001090 ORTHO05D006167 3.8e-38 162.5 90 83.3
HanXRQChr17g0555271 Helianthus annuus HOM05D001090 ORTHO05D006167 4.9e-38 162.2 341 36.4
Peaxi162Scf00197g00004 Petunia axillaris HOM05D001090 ORTHO05D006167 4.2e-37 159.1 88 86.4
CDE08G1158 Ceratophyllum demersum HOM05D001090 ORTHO05D006167 7.1e-37 158.3 293 37.2
SEGI_00376 Sequoiadendron giganteum HOM05D001090 ORTHO05D006167 4.6e-36 155.6 306 36.9
ATR0598G284 Amborella trichopoda HOM05D001090 ORTHO05D006167 1.1e-34 151.0 298 36.9
Os01g0321700 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D006167 5.6e-34 148.7 278 36.0
unitig_0.g2255 Utricularia gibba HOM05D001090 ORTHO05D006167 7.3e-34 148.3 97 74.2
Peaxi162Scf02266g00001 Petunia axillaris HOM05D001090 ORTHO05D006167 2.8e-33 146.4 82 85.4
MBI19_g30286_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D006167 6.2e-33 145.2 97 70.1
Peaxi162Scf02154g00004 Petunia axillaris HOM05D001090 ORTHO05D006167 1.4e-32 144.1 91 78.0
Mapoly0084s0040 Marchantia polymorpha HOM05D001090 ORTHO05D006167 1.9e-29 133.7 93 63.4
CSS0011193 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D006167 5.4e-29 132.1 68 89.7
Oeu007522.3 Olea europaea HOM05D001090 ORTHO05D006167 5.4e-29 132.1 84 75.0
SGA_v2.0_scaffold36G14317 Striga asiatica HOM05D001090 ORTHO05D006167 9.3e-29 131.3 154 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1595 Anthoceros agrestis HOM05D001090 ORTHO05D006167 6.7e-27 125.2 104 54.8
SMO119G0041 Selaginella moellendorffii HOM05D001090 ORTHO05D006167 1.9e-26 123.6 93 63.4
Pp3c8_12300 Physcomitrium patens HOM05D001090 ORTHO05D006167 2.1e-25 120.2 94 57.4
Pp3c24_9090 Physcomitrium patens HOM05D001090 ORTHO05D006167 2.8e-25 119.8 92 59.8
Cpa.g.sc57.13 Carica papaya HOM05D001090 ORTHO05D006167 1.4e-24 117.5 61 86.9
Nitab4.5_0008430g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 2.2e-22 110.2 87 67.8
Actinidia20965 Actinidia chinensis HOM05D001410 ORTHO05D003969 1.9e-21 107.1 148 53.4
VMungo0565G0003 Vigna mungo HOM05D001090 ORTHO05D006167 1.1e-16 91.3 54 79.6
CBR_g939 Chara braunii HOM05D001090 ORTHO05D006167 8.4e-14 81.6 66 54.5


User provided reference genes

Program Settings