Gene: COL.COLO4_23131
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_23131
- Transcript Identifier COL.rna21873
- Gene Type Coding gene
- Location AWUE01018156.1 : 18472-21999 : negative
Gene Family Information
- ID HOM05D001090
- #Genes/#Species 563/100
- Phylogenetic origin
- ID ORTHO05D006167
- #Genes/#Species 146/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna21873
- GenBank OMO82284.1
- id gene23103
- gene_name COLO4_23131
- uniprot A0A1R3II82
Descriptions
- Description Zinc finger, Sec23/Sec24-type
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0010584 | ISO | PLAZA Integrative Orthology | pollen exine formation | AT4G01810 |
| GO:0048658 | ISO | PLAZA Integrative Orthology | anther wall tapetum development | AT4G01810 |
| GO:0006605 | ISO | PLAZA Homology (enrichment) | protein targeting | HOM05D001090 |
| GO:0006888 | IEA | GOA Database | endoplasmic reticulum to Golgi vesicle-mediated transport | |
| GO:0006888 | IEA | InterPro | endoplasmic reticulum to Golgi vesicle-mediated transport | |
| GO:0016192 | IEA | GOA Database | vesicle-mediated transport | |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D001090 |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070971 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum exit site | AT4G01810 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G01810 |
| GO:0030127 | IEA | GOA Database | COPII vesicle coat | |
| GO:0030127 | IEA | InterPro | COPII vesicle coat | |
| GO:0012507 | IEA | GOA Database | ER to Golgi transport vesicle membrane | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005783 | IEA | GOA Database | endoplasmic reticulum | |
| GO:0031410 | IEA | GOA Database | cytoplasmic vesicle | |
| GO:0005789 | IEA | GOA Database | endoplasmic reticulum membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036174 | Zinc finger, Sec23/Sec24-type superfamily |
| IPR037364 | Protein transport protein Sec23 |
| IPR006895 | Zinc finger, Sec23/Sec24-type |
| IPR036465 | von Willebrand factor A-like domain superfamily |
| IPR029006 | ADF-H/Gelsolin-like domain superfamily |
| IPR012990 | Sec23/Sec24 beta-sandwich |
| IPR006900 | Sec23/Sec24, helical domain |
| IPR006896 | Sec23/Sec24, trunk domain |
| IPR036175 | Sec23/Sec24 helical domain superfamily |
| IPR036180 | Gelsolin-like domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |