Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.8e-182 644.0 950 100.0
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.0e-178 630.6 950 88.5
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.7e-100 371.7 339 69.6
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.5e-98 364.0 339 63.7
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.6e-95 354.0 339 63.7
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.9e-94 349.4 245 77.1
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.9e-94 349.4 245 77.1
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 8.9e-94 349.4 338 66.0
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 5.8e-93 346.7 339 63.7
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.4e-91 341.3 343 59.2
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 9.2e-91 339.3 245 73.9
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.2e-90 339.0 348 56.3
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.0e-90 336.7 339 60.5
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 8.9e-86 322.8 333 57.7
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.5e-85 322.0 334 58.7
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.3e-84 318.9 357 59.4
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.7e-84 318.5 348 53.2
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 8.4e-84 316.2 245 70.2
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.2e-83 313.9 337 57.3
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 4.6e-82 310.5 244 63.5
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 3.9e-81 307.4 246 66.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 6.6e-81 306.6 354 59.0
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 8.7e-81 306.2 340 51.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.1e-80 305.8 300 59.7
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.9e-80 305.1 151 99.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.3e-80 303.1 189 75.1
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 7.3e-80 303.1 244 64.8
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 2.1e-79 301.6 354 53.7
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 4.8e-79 300.4 351 53.6
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.2e-79 300.1 325 54.5
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 6.2e-79 300.1 338 55.3
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.4e-78 298.9 248 64.5
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 3.1e-78 297.7 355 55.5
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 3.1e-78 297.7 339 52.8
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 4.0e-78 297.4 337 55.2
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.5e-77 295.4 378 51.1
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.5e-77 295.4 238 66.8
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.6e-77 294.7 343 53.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.4e-77 294.3 249 64.7
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 4.5e-77 293.9 244 66.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.5e-77 293.9 343 56.0
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 4.5e-77 293.9 246 64.2
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 9.9e-77 292.7 295 58.6
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.3e-76 292.4 211 67.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 3.8e-76 290.8 341 56.3
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.8e-76 290.8 353 55.0
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 8.4e-76 289.7 244 68.9
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.4e-75 288.9 316 52.5
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.4e-75 288.9 339 51.9
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.4e-75 288.9 341 52.5
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.4e-75 288.1 353 56.9
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.4e-75 288.1 243 61.3
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 3.2e-75 287.7 334 52.4
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 5.4e-75 287.0 298 58.1
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 7.1e-75 286.6 244 59.8
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 7.1e-75 286.6 343 51.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.6e-74 285.4 337 52.5
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 4.6e-74 283.9 367 48.8
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 4.6e-74 283.9 348 54.3
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.0e-73 282.7 346 50.6
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.3e-73 282.3 237 66.2
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.8e-73 282.0 325 53.2
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 3.0e-73 281.2 353 49.0
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 5.1e-73 280.4 360 51.7
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 6.7e-73 280.0 246 65.9
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.7e-73 279.6 325 52.9
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.7e-73 279.6 300 55.0
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.6e-71 275.4 331 53.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 6.2e-71 273.5 246 60.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.4e-70 271.6 246 60.2
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 3.1e-70 271.2 246 60.6
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.3e-70 270.4 314 54.8
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.5e-69 268.9 245 54.3
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 2.0e-69 268.5 345 53.0
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.6e-69 268.1 349 51.0
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 5.8e-69 266.9 340 48.2
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 7.6e-69 266.5 246 53.7
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 5.5e-67 260.4 305 52.8
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 9.3e-67 259.6 359 46.8
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 9.3e-67 259.6 352 49.1
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.6e-66 257.3 328 50.6
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.0e-65 256.1 350 46.0
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 5.1e-65 253.8 349 45.3
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 6.7e-65 253.4 351 46.4
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 6.7e-65 253.4 350 45.7
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 6.7e-65 253.4 241 57.3
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.9e-64 251.9 363 49.0
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.9e-64 251.9 187 65.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.5e-64 251.5 352 46.9
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 3.3e-64 251.1 328 51.2
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 7.4e-64 250.0 334 49.4
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 4.9e-60 237.3 184 65.2
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 8.4e-60 236.5 284 52.1
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 8.4e-60 236.5 284 53.2
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.6e-58 232.3 241 54.8
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.1e-57 227.3 355 47.9
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.8e-55 220.7 141 78.0
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 8.2e-55 219.9 143 74.8
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.6e-50 204.1 167 59.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.3e-48 198.0 124 75.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-45 189.5 191 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 7.7e-45 186.8 186 48.9
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.9e-43 182.2 201 44.8
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.9e-43 182.2 125 72.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 9.4e-43 179.9 201 45.8
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 4.4e-40 171.0 122 68.9
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 6.9e-38 163.7 116 71.6
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.3e-33 148.7 184 45.1
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 8.8e-33 146.7 184 44.6
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 2.6e-32 145.2 117 63.2
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.4e-32 143.7 81 79.0
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.1e-30 137.9 121 60.3
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.9e-29 134.0 120 58.3
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 7.7e-29 133.7 88 67.0
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.8e-28 131.3 118 58.5
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 6.5e-28 130.6 121 58.7
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 3.2e-27 128.3 119 53.8
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.6e-26 125.9 191 40.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.6e-26 124.8 184 35.9
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.6e-26 124.8 100 62.0
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 8.0e-26 123.6 78 74.4
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.8e-25 122.5 79 70.9
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.8e-25 122.5 116 54.3
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.0e-25 121.7 107 59.8
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.0e-24 119.0 74 68.9
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 4.4e-24 117.9 121 52.9
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.4e-24 117.9 119 52.9
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.7e-21 107.1 86 59.3
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 6.1e-18 97.4 70 64.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.7e-15 89.4 58 67.2
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.7e-12 79.3 78 56.4
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 6.5e-12 77.4 145 32.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 1.1e-11 76.6 48 66.7
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.6e-10 72.8 77 48.1
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.8e-10 72.0 40 80.0
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.7e-07 62.8 43 69.8
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 2.8e-07 62.0 102 34.3
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 1.4e-06 59.7 98 34.7
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 4.1e-06 58.2 39 66.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 4.1e-06 58.2 39 66.7
HanXRQChr07g0199041 Helianthus annuus HOM05D000142 ORTHO05D001253 5.4e-06 57.8 107 39.3
Lalb_Chr20g0116271 Lupinus albus HOM05D000285 ORTHO05D000241 7.0e-06 57.4 97 33.0
Medtr4g104470 Medicago truncatula HOM05D000142 ORTHO05D001253 9.2e-06 57.0 98 36.7


User provided reference genes

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