Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9YYL5D Arachis hypogaea HOM05D002640 ORTHO05D003231 3.4e-52 208.4 130 100.0
arahy.Tifrunner.gnm1.ann1.FM1LAN Arachis hypogaea HOM05D002640 ORTHO05D003231 1.0e-24 117.1 60 93.3
arahy.Tifrunner.gnm1.ann1.PY7FNU Arachis hypogaea HOM05D002640 ORTHO05D003231 1.0e-24 117.1 60 93.3
Glyma.19G125600 Glycine max HOM05D002640 ORTHO05D003231 4.3e-23 111.7 60 88.3
Glyma.03G121000 Glycine max HOM05D002640 ORTHO05D003231 9.5e-23 110.5 60 86.7
Phvul.001G117200 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 9.5e-23 110.5 60 86.7
VMungo1383G1765 Vigna mungo HOM05D002640 ORTHO05D003231 9.5e-23 110.5 60 86.7
Manes.08G162401 Manihot esculenta HOM05D002640 ORTHO05D003231 3.6e-22 108.6 60 86.7
Ca_08696_v3 Cicer arietinum L. HOM05D002640 ORTHO05D003231 5.2e-21 104.8 60 83.3
Oeu022996.1 Olea europaea HOM05D002640 ORTHO05D003231 2.0e-20 102.8 60 78.3
MD00G1108000 Malus domestica HOM05D002640 ORTHO05D003231 2.6e-20 102.4 60 80.0
Thecc.10G133700 Theobroma cacao HOM05D002640 ORTHO05D003231 2.6e-20 102.4 60 80.0
ClCG11G010450 Citrullus lanatus HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 81.7
MELO3C008653.2 Cucumis melo HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 81.7
CsaV3_2G009910 Cucumis sativus L. HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 81.7
Eucgr.K01682 Eucalyptus grandis HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 80.0
MD00G1025500 Malus domestica HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 80.0
GSVIVG01025815001 Vitis vinifera HOM05D002640 ORTHO05D003231 3.4e-20 102.1 60 81.7
COL.COLO4_10242 Corchorus olitorius HOM05D002640 ORTHO05D003231 5.8e-20 101.3 60 78.3
TWI77G0284 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 5.8e-20 101.3 60 78.3
Duzib106G1211 Durio zibethinus HOM05D002640 ORTHO05D003231 7.6e-20 100.9 60 78.3
Gohir.D10G199500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 7.6e-20 100.9 60 78.3
Gorai.011G223600 Gossypium raimondii HOM05D002640 ORTHO05D003231 7.6e-20 100.9 60 78.3
CANSAT64G1505 Cannabis sativa HOM05D002640 ORTHO05D003231 9.9e-20 100.5 60 80.0
Haze_20287 Corylus avellana HOM05D002640 ORTHO05D003231 9.9e-20 100.5 59 83.1
Gohir.A10G191700 Gossypium hirsutum HOM05D002640 ORTHO05D003231 9.9e-20 100.5 60 78.3
Oeu044234.2 Olea europaea HOM05D002640 ORTHO05D003231 9.9e-20 100.5 60 76.7
Sc19g0007910 Simmondsia chinensis HOM05D002640 ORTHO05D003231 9.9e-20 100.5 60 81.7
TPR.G26612 Trifolium pratense HOM05D002640 ORTHO05D003231 9.9e-20 100.5 60 80.0
Atru.chr1.1380 Acer truncatum HOM05D002640 ORTHO05D003231 1.3e-19 100.1 60 76.7
Lj2C412G3 Lonicera japonica HOM05D002640 ORTHO05D003231 1.3e-19 100.1 60 78.3
Duzib114G0695 Durio zibethinus HOM05D002640 ORTHO05D003231 2.2e-19 99.4 60 78.3
Actinidia37853 Actinidia chinensis HOM05D002640 ORTHO05D003231 3.8e-19 98.6 60 76.7
Lj1C1081G2 Lonicera japonica HOM05D002640 ORTHO05D003231 3.8e-19 98.6 60 76.7
QL07p013828 Quercus lobata HOM05D002640 ORTHO05D003231 3.8e-19 98.6 59 81.4
vmacro08975 Vaccinium macrocarpon HOM05D002640 ORTHO05D003231 4.9e-19 98.2 60 75.0
Medtr7g088700 Medicago truncatula HOM05D002640 ORTHO05D003231 6.4e-19 97.8 60 78.3
Prupe.7G019900 Prunus persica HOM05D002640 ORTHO05D003231 6.4e-19 97.8 60 76.7
Sed0027584 Sechium edule HOM05D002640 ORTHO05D003231 6.4e-19 97.8 60 76.7
PGR142G0829 Punica granatum HOM05D002640 ORTHO05D003231 1.1e-18 97.1 60 76.7
Hund19066 Selenicereus undatus HOM05D002640 ORTHO05D003231 1.1e-18 97.1 56 82.1
Cpa.g.sc1617.1 Carica papaya HOM05D002640 ORTHO05D003231 1.4e-18 96.7 59 79.7
Lj1g0022797 Lotus japonicus HOM05D002640 ORTHO05D003231 1.4e-18 96.7 60 76.7
Nitab4.5_0000062g0270 Nicotiana tabacum HOM05D002640 ORTHO05D003231 1.9e-18 96.3 54 81.5
Lalb_Chr24g0400581 Lupinus albus HOM05D002640 ORTHO05D003231 2.4e-18 95.9 60 73.3
RcHm_v2.0_Chr3g0494601 Rosa chinensis HOM05D002640 ORTHO05D003231 3.2e-18 95.5 60 76.7
TWI53G2001 Tripterygium wilfordii HOM05D002640 ORTHO05D003231 3.2e-18 95.5 60 71.7
CAN.G128.94 Capsicum annuum HOM05D002640 ORTHO05D003231 4.2e-18 95.1 54 79.6
CSS0028254 Camellia sinensis var. sinensis HOM05D002640 ORTHO05D003231 5.4e-18 94.7 54 81.5
DCAR_013529 Daucus carota HOM05D002640 ORTHO05D003231 5.4e-18 94.7 60 71.7
Gohir.A06G172600 Gossypium hirsutum HOM05D002640 ORTHO05D003231 7.1e-18 94.4 60 76.7
Gohir.D06G181500 Gossypium hirsutum HOM05D002640 ORTHO05D003231 7.1e-18 94.4 60 76.7
Gorai.010G212900 Gossypium raimondii HOM05D002640 ORTHO05D003231 7.1e-18 94.4 60 76.7
PGSC0003DMG400028197 Solanum tuberosum HOM05D002640 ORTHO05D003231 7.1e-18 94.4 54 77.8
Nitab4.5_0003225g0040 Nicotiana tabacum HOM05D002640 ORTHO05D003231 9.2e-18 94.0 54 79.6
CiPaw.09G052100 Carya illinoinensis HOM05D002640 ORTHO05D003231 1.2e-17 93.6 59 76.3
Solyc10g081020.2 Solanum lycopersicum HOM05D002640 ORTHO05D003231 1.2e-17 93.6 54 77.8
Sopen10g031530 Solanum pennellii HOM05D002640 ORTHO05D003231 1.2e-17 93.6 54 77.8
TAR623G0852 Trochodendron aralioides HOM05D002640 ORTHO05D003231 1.2e-17 93.6 56 76.8
C06p39050 Brassica napus HOM05D002640 ORTHO05D003231 1.6e-17 93.2 59 72.9
BolC6t38997H Brassica oleracea HOM05D002640 ORTHO05D003231 1.6e-17 93.2 59 72.9
BraA07t30909Z Brassica rapa HOM05D002640 ORTHO05D003231 1.6e-17 93.2 59 72.9
Ciclev10013566m.g Citrus clementina HOM05D002640 ORTHO05D003231 1.6e-17 93.2 60 73.3
Medtr7g087475 Medicago truncatula HOM05D002640 ORTHO05D003231 1.6e-17 93.2 60 76.7
A07p32820 Brassica napus HOM05D002640 ORTHO05D003231 2.1e-17 92.8 59 72.9
THA.LOC104805690 Tarenaya hassleriana HOM05D002640 ORTHO05D003231 2.1e-17 92.8 60 73.3
Cc06_g21410 Coffea canephora HOM05D002640 ORTHO05D003231 2.7e-17 92.4 51 82.4
Migut.J01553 Erythranthe guttata HOM05D002640 ORTHO05D003231 2.7e-17 92.4 60 71.7
Psat0s699g0040 Pisum sativum HOM05D002640 ORTHO05D003231 3.5e-17 92.0 60 71.7
Sp5g20200 Schrenkiella parvula HOM05D002640 ORTHO05D003231 3.5e-17 92.0 59 71.2
DCAR_020604 Daucus carota HOM05D002640 ORTHO05D003231 7.8e-17 90.9 61 73.8
Lalb_Chr14g0365421 Lupinus albus HOM05D002640 ORTHO05D003231 7.8e-17 90.9 60 73.3
Potri.016G029200 Populus trichocarpa HOM05D002640 ORTHO05D003231 1.0e-16 90.5 60 70.0
Dinv10811 Davidia involucrata HOM05D002640 ORTHO05D003231 1.3e-16 90.1 53 77.4
FAN19G2288 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.3e-16 90.1 60 73.3
FAN23G1939 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.3e-16 90.1 60 73.3
FAN26G3239 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.3e-16 90.1 60 73.3
FAN28G1238 Fragaria x ananassa HOM05D002640 ORTHO05D003231 1.3e-16 90.1 60 73.3
EL10Ac3g07304 Beta vulgaris HOM05D002640 ORTHO05D003231 1.7e-16 89.7 60 70.0
BcaB05g24114 Brassica carinata HOM05D002640 ORTHO05D003231 1.7e-16 89.7 59 67.8
Sabra16G0033200 Salix brachista HOM05D002640 ORTHO05D003231 1.7e-16 89.7 60 71.7
BcaC03g14705 Brassica carinata HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
A02p13220 Brassica napus HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
C02p17460 Brassica napus HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
C02p21400 Brassica napus HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
BolC2t07860H Brassica oleracea HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
BolC2t08277H Brassica oleracea HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
BraA02t06378Z Brassica rapa HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
Thhalv10018001m.g Eutrema salsugineum HOM05D002640 ORTHO05D003231 2.3e-16 89.4 59 69.5
Actinidia38202 Actinidia chinensis HOM05D002640 ORTHO05D003231 3.0e-16 89.0 54 75.9
FvH4_1g29220 Fragaria vesca HOM05D002640 ORTHO05D003231 3.9e-16 88.6 60 71.7
MSTRG.6300 Avicennia marina HOM05D002640 ORTHO05D003231 6.6e-16 87.8 54 74.1
SGA_v2.0_scaffold66G22308 Striga asiatica HOM05D002640 ORTHO05D003231 6.6e-16 87.8 60 65.0
CARHR057100 Cardamine hirsuta HOM05D002640 ORTHO05D003231 1.5e-15 86.7 59 67.8
Peaxi162Scf00601g00007 Petunia axillaris HOM05D002640 ORTHO05D003231 1.5e-15 86.7 60 71.7
AL2G22130 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 1.9e-15 86.3 59 67.8
AT1G65440 Arabidopsis thaliana HOM05D002640 ORTHO05D003231 1.9e-15 86.3 59 67.8
Carub.0002s1117 Capsella rubella HOM05D002640 ORTHO05D003231 1.9e-15 86.3 59 67.8
AUR62018416 Chenopodium quinoa HOM05D002640 ORTHO05D003231 1.9e-15 86.3 60 68.3
HanXRQChr06g0177131 Helianthus annuus HOM05D002640 ORTHO05D003231 1.9e-15 86.3 60 65.0
Sabra06G0021300 Salix brachista HOM05D002640 ORTHO05D003231 1.9e-15 86.3 54 75.9
Aa31LG2G2460 Aethionema arabicum HOM05D002640 ORTHO05D003231 2.5e-15 85.9 59 66.1
SalBow6G2030 Salvia bowleyana HOM05D002640 ORTHO05D003231 2.5e-15 85.9 54 74.1
Potri.006G031900 Populus trichocarpa HOM05D002640 ORTHO05D003231 4.3e-15 85.1 54 74.1
Rhsim04G0118000 Rhododendron simsii HOM05D002640 ORTHO05D003231 4.3e-15 85.1 53 71.7
QL07p013799 Quercus lobata HOM05D002640 ORTHO05D003231 5.6e-15 84.7 59 74.6
CDE08G1380 Ceratophyllum demersum HOM05D002640 ORTHO05D003231 7.3e-15 84.3 54 74.1
ECA236G4010 Erigeron canadensis HOM05D002640 ORTHO05D003231 9.6e-15 84.0 60 65.0
unitig_21.g20682 Utricularia gibba HOM05D002640 ORTHO05D003231 1.3e-14 83.6 57 64.9
PSO339G4261 Papaver somniferum HOM05D002640 ORTHO05D003231 6.2e-14 81.3 59 61.0
PSO384G3455 Papaver somniferum HOM05D002640 ORTHO05D003231 6.2e-14 81.3 59 61.0
Prupe.8G211800 Prunus persica HOM05D002640 ORTHO05D003231 3.1e-13 79.0 60 65.0
Ah.04g150530 Amaranthus hybridus HOM05D002640 ORTHO05D003231 4.0e-13 78.6 60 66.7
Nn7g37023 Nelumbo nucifera HOM05D002640 ORTHO05D003231 1.2e-12 77.0 51 70.6
Psat3g019400 Pisum sativum HOM05D002640 ORTHO05D003231 1.5e-12 76.6 60 63.3
GSVIVG01012377001 Vitis vinifera HOM05D002640 ORTHO05D003231 2.0e-12 76.3 59 66.1
GSVIVG01012381001 Vitis vinifera HOM05D002640 ORTHO05D003231 2.0e-12 76.3 59 66.1
Aqoxy1G00051 Aquilegia oxysepala HOM05D002640 ORTHO05D003231 5.8e-12 74.7 60 60.0
HPP92_011270 Vanilla planifolia HOM05D002640 ORTHO05D003231 2.2e-11 72.8 51 62.7
HPP92_011291 Vanilla planifolia HOM05D002640 ORTHO05D003231 2.2e-11 72.8 51 62.7
Lsat_1_v5_gn_8_83860 Lactuca sativa HOM05D002640 ORTHO05D003231 3.8e-11 72.0 54 61.1
Zm00001eb291590 Zea mays HOM05D002640 ORTHO05D003231 4.9e-11 71.6 60 58.3
Migut.J01544 Erythranthe guttata HOM05D002640 ORTHO05D003231 6.4e-11 71.2 61 62.3
HanXRQChr04g0125591 Helianthus annuus HOM05D002640 ORTHO05D003231 1.1e-10 70.5 59 59.3
AUR62041298 Chenopodium quinoa HOM05D002640 ORTHO05D003231 1.9e-10 69.7 54 63.0
MD10G1173400 Malus domestica HOM05D002640 ORTHO05D003231 3.2e-10 68.9 63 55.6
MBI13_g02373_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 2.1e-09 66.2 56 55.4
SEGI_15393 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.1e-09 66.2 60 55.0
MBI11_g01739_MAGBIO Magnolia biondii HOM05D002640 ORTHO05D003231 7.8e-09 64.3 56 53.6
ATR0782G064 Amborella trichopoda HOM05D002640 ORTHO05D003231 2.3e-08 62.8 60 60.0
SEGI_20723 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 2.3e-08 62.8 48 62.5
SEGI_00617 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 3.9e-08 62.0 48 60.4
ECA247G4078 Erigeron canadensis HOM05D002640 ORTHO05D003231 4.3e-07 58.5 54 48.1
HanXRQChr10g0298481 Helianthus annuus HOM05D002640 ORTHO05D003231 5.6e-07 58.2 61 49.2
QL04p022175 Quercus lobata HOM05D002640 ORTHO05D003231 5.6e-07 58.2 60 50.0
Lsat_1_v5_gn_9_32200 Lactuca sativa HOM05D002640 ORTHO05D003231 9.6e-07 57.4 60 50.0
Manes.04G154475 Manihot esculenta HOM05D002640 ORTHO05D003231 9.6e-07 57.4 57 52.6
AL2G12170 Arabidopsis lyrata HOM05D002640 ORTHO05D003231 2.1e-06 56.2 60 55.0
BcaNung05532 Brassica carinata HOM05D002640 ORTHO05D003231 2.1e-06 56.2 33 75.8
VMungo1080G1740 Vigna mungo HOM05D002640 ORTHO05D003231 2.8e-06 55.8 59 45.8
Lj9C650G10 Lonicera japonica HOM05D002640 ORTHO05D003231 3.6e-06 55.5 51 52.9
Phvul.005G013600 Phaseolus vulgaris HOM05D002640 ORTHO05D003231 3.6e-06 55.5 59 44.1


User provided reference genes

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