Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.9e-236 822.4 500 100.0
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 6.1e-227 790.8 514 94.4
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.0e-226 788.5 514 94.4
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 3.0e-226 788.5 513 94.2
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.8e-223 779.2 514 93.0
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.6e-222 776.2 504 94.4
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 7.7e-222 773.9 514 93.0
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.8e-221 771.5 521 89.8
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 9.4e-220 766.9 514 93.0
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.7e-219 765.4 512 92.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 6.1e-219 764.2 514 90.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 6.1e-219 764.2 514 86.2
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 8.0e-219 763.8 514 91.1
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.3e-218 762.3 514 91.1
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 4.0e-218 761.5 514 89.3
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.0e-217 759.2 514 88.9
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.6e-217 758.8 514 89.7
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 3.4e-217 758.4 512 88.9
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.4e-217 758.1 514 90.1
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 2.2e-216 755.7 514 89.1
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.4e-215 751.1 514 88.3
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 9.1e-215 750.4 514 88.5
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.2e-214 750.0 514 88.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.2e-214 750.0 514 89.3
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.0e-214 749.2 514 89.7
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.7e-214 748.8 513 89.1
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 5.9e-214 747.7 514 85.0
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 7.7e-214 747.3 511 89.2
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.3e-213 746.5 514 88.1
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.3e-213 746.5 511 89.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.3e-213 745.7 509 84.5
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 6.6e-213 744.2 511 90.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.6e-213 744.2 514 83.3
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 6.6e-213 744.2 510 85.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.5e-212 743.0 511 84.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.9e-212 742.7 512 88.7
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.9e-212 742.7 513 88.5
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.9e-212 742.7 510 85.5
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.9e-212 742.7 514 89.1
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.3e-212 741.9 514 87.9
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.2e-212 741.5 510 88.2
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 5.5e-212 741.1 514 87.0
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-211 740.0 510 84.3
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.2e-211 740.0 514 89.9
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.6e-211 739.6 514 87.5
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.6e-211 739.6 514 88.7
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.1e-211 739.2 512 88.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.6e-211 738.4 513 88.5
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 6.1e-211 737.6 514 86.2
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 8.0e-211 737.3 513 87.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.0e-210 736.9 511 88.5
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.4e-210 736.5 510 88.0
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.4e-210 736.5 536 85.8
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.8e-210 736.1 513 87.1
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 4.0e-210 734.9 512 88.1
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 5.2e-210 734.6 514 85.8
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.5e-209 733.0 514 82.5
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 3.4e-209 731.9 514 87.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 4.4e-209 731.5 513 88.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.3e-208 729.9 511 86.1
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.1e-207 726.9 512 89.1
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.1e-207 724.9 515 86.6
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 7.0e-207 724.2 513 82.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.2e-206 723.4 514 87.2
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.6e-206 723.0 514 87.0
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.6e-206 723.0 504 88.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 4.5e-206 721.5 513 84.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 5.9e-206 721.1 504 85.7
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 5.9e-206 721.1 514 81.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 1.7e-205 719.5 513 84.2
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 3.8e-205 718.4 511 80.8
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.0e-205 718.0 514 86.8
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 5.0e-205 718.0 513 84.0
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 9.5e-204 713.8 535 79.3
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.2e-203 713.4 514 80.5
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.2e-203 713.4 514 80.5
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.6e-203 713.0 527 75.1
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 8.0e-203 710.7 511 79.8
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 8.0e-203 710.7 511 79.5
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 4.0e-202 708.4 507 86.0
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.0e-202 708.4 504 85.5
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 5.2e-202 708.0 511 82.0
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.2e-201 706.8 500 84.2
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 4.4e-201 704.9 511 83.2
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 7.5e-201 704.1 514 83.7
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.2e-200 702.6 511 83.0
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 3.7e-200 701.8 509 83.1
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 3.7e-200 701.8 509 83.1
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.4e-199 699.9 542 76.6
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.3e-196 688.3 514 79.2
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.0e-194 681.8 500 75.8
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 8.9e-194 680.6 511 83.4
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.4e-193 678.7 514 79.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 5.8e-193 677.9 514 73.9
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.9e-192 675.6 520 80.2
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.9e-192 674.9 514 81.1
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.1e-191 673.7 557 76.3
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-191 673.7 509 83.9
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.3e-189 666.0 485 84.3
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 3.0e-189 665.6 525 80.8
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.1e-188 663.7 514 80.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 5.2e-186 654.8 511 72.6
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 7.5e-185 651.0 542 68.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.4e-183 646.0 464 89.0
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 3.6e-179 632.1 468 85.9
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.1e-178 630.6 484 81.4
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.0e-173 612.5 513 79.3
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 5.3e-170 601.7 435 84.6
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 9.9e-169 597.4 428 88.6
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.1e-167 594.0 430 88.6
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 7.1e-151 538.1 511 66.3
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 4.6e-150 535.4 511 67.7
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 3.3e-148 529.3 414 84.5
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 2.2e-128 463.4 269 87.0
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.5e-124 450.7 254 90.9
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 2.0e-113 413.7 308 79.5
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 4.7e-110 402.5 316 78.5
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 3.8e-104 382.9 385 58.2
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 4.2e-103 379.4 196 99.5
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 9.4e-103 378.3 196 99.0
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.5e-87 327.8 354 73.4
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 9.5e-79 298.5 257 80.9
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.3e-75 288.1 523 48.6
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 6.8e-69 265.8 175 86.3
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.5e-65 253.4 134 96.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.7e-64 251.1 512 36.7
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.6e-46 191.4 150 66.0
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 8.4e-35 152.5 295 42.7
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.5e-34 151.0 227 45.8
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.2e-34 150.6 99 73.7
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 7.1e-34 149.4 80 91.2
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-33 148.7 137 63.5
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 6.0e-33 146.4 107 72.9
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.3e-32 144.4 328 31.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-28 132.1 70 90.0
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 2.9e-27 127.5 80 80.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 8.4e-27 125.9 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 7.2e-26 122.9 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 7.2e-26 122.9 64 87.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 4.1e-21 107.1 56 83.9
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 2.2e-19 101.3 51 90.2
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.9e-18 98.2 56 73.2
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.8e-16 91.7 47 97.9
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.5e-15 88.6 70 61.4
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.5e-15 88.6 70 61.4
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 5.7e-15 86.7 45 82.2
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.8e-14 84.3 127 40.2
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.1e-13 82.4 45 77.8
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 5.9e-12 76.6 105 44.8
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.8e-11 73.9 36 83.3
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.1e-10 72.4 134 72.4
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 6.7e-08 63.2 35 80.0
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 9.7e-07 59.3 61 54.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 2.8e-06 57.8 29 82.8
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 8.2e-06 56.2 74 51.4


User provided reference genes

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