Gene: Sopen06g023340
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g023340
- Transcript Identifier Sopen06g023340.1
- Gene Type Coding gene
- Location Spenn-ch06 : 50763230-50774467 : negative
Gene Family Information
- ID HOM05D004842
- #Genes/#Species 152/96
- Phylogenetic origin
- ID ORTHO05D005929
- #Genes/#Species 150/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g023340.1
Descriptions
- Description Encodes SMU1, a protein involved in RNA splicing. | SUPPRESSORS OF MEC-8 AND UNC-52 1 (SMU1) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , CTLH, C-terminal LisH motif , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , LisH dimerisation motif , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT1G73720 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G73720 |
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT1G73720 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.6.10.1 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.SMU splicing factor complex.component SMU1 |