Gene: SGA_v2.0_scaffold118G32576
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold118G32576
- Transcript Identifier SGA_v2.0_scaffold118T32576
- Gene Type Coding gene
- Location scaffold118 : 705646-714643 : positive
Gene Family Information
- ID HOM05D004842
- #Genes/#Species 152/96
- Phylogenetic origin
- ID ORTHO05D005929
- #Genes/#Species 150/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- product WD40 repeat-containing protein SMU1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT1G73720 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT1G73720 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR033896 | MADS MEF2-like |
| IPR036879 | Transcription factor, MADS-box superfamily |
| IPR006595 | CTLH, C-terminal LisH motif |
| IPR002487 | Transcription factor, K-box |
| IPR002100 | Transcription factor, MADS-box |
| IPR006594 | LIS1 homology motif |
| IPR001680 | WD40 repeat |
| IPR020472 | G-protein beta WD-40 repeat |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |
| 16.2.6.10.1 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.SMU splicing factor complex.component SMU1 |