Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 8.6e-114 413.7 212 100.0
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.9e-113 412.5 212 99.5
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.1e-111 405.2 210 98.1
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 4.0e-111 404.8 210 98.6
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 4.0e-111 404.8 210 98.6
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.8e-111 404.1 210 98.1
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 8.9e-111 403.7 210 97.6
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.5e-110 402.9 210 97.6
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.4e-110 401.7 210 97.1
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 4.4e-110 401.4 210 97.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.8e-110 401.0 210 97.6
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 7.5e-110 400.6 210 96.7
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 7.5e-110 400.6 210 96.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.3e-109 399.8 209 97.1
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.9e-109 397.9 210 96.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.4e-108 396.4 210 95.7
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.4e-108 396.4 208 96.2
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.4e-108 396.4 208 96.2
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.4e-108 396.4 208 96.2
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 4.1e-108 394.8 208 95.7
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.4e-108 394.4 210 95.2
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 5.4e-108 394.4 210 94.8
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 5.4e-108 394.4 210 94.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 5.4e-108 394.4 208 94.7
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 7.1e-108 394.0 210 95.2
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 9.2e-108 393.7 208 96.2
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 9.2e-108 393.7 207 96.1
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 9.2e-108 393.7 210 95.7
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.1e-107 392.5 210 94.3
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.7e-107 392.1 209 94.7
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 4.6e-107 391.3 210 94.3
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 6.0e-107 391.0 208 95.7
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 7.8e-107 390.6 210 93.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 7.8e-107 390.6 210 94.3
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.0e-106 390.2 209 93.3
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.0e-106 390.2 210 93.8
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.0e-106 390.2 210 93.3
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.3e-106 389.8 210 93.3
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 2.3e-106 389.0 210 92.4
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.3e-106 389.0 210 92.4
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.3e-106 389.0 207 94.7
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 3.0e-106 388.7 210 92.9
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 3.0e-106 388.7 210 93.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.9e-106 388.3 209 92.8
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 3.9e-106 388.3 207 94.2
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 3.9e-106 388.3 200 99.0
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 5.1e-106 387.9 208 94.7
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 6.6e-106 387.5 209 93.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.6e-106 387.5 210 92.9
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 6.6e-106 387.5 210 92.9
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 8.6e-106 387.1 207 95.7
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 8.6e-106 387.1 210 92.9
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 8.6e-106 387.1 210 94.3
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.1e-105 386.7 210 91.9
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.5e-105 386.3 210 92.4
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.5e-105 386.3 209 92.8
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.5e-105 386.3 210 92.4
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.5e-105 385.6 208 93.8
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.3e-105 385.2 210 92.4
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.3e-105 384.8 210 91.9
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 4.3e-105 384.8 208 93.3
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 7.3e-105 384.0 210 91.4
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.2e-104 383.3 205 95.6
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.2e-104 383.3 210 91.9
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.6e-104 382.9 210 91.9
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.1e-104 382.5 210 91.4
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 8.1e-104 380.6 210 91.0
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.1e-103 380.2 208 92.3
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.4e-103 379.8 210 91.4
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.4e-103 379.8 196 99.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.4e-103 379.8 209 90.9
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 1.4e-103 379.8 209 90.9
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.4e-103 379.8 209 90.9
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 4.0e-103 378.3 207 91.3
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 8.9e-103 377.1 207 90.8
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 8.9e-103 377.1 203 93.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.2e-102 376.7 207 91.8
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.2e-102 376.7 207 90.3
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-102 376.7 207 90.3
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-102 376.7 207 90.3
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-102 376.7 207 90.3
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.5e-102 376.3 232 84.9
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.4e-102 375.2 207 90.8
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.4e-102 375.2 209 89.5
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 3.4e-102 375.2 210 89.5
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 3.4e-102 375.2 210 89.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.4e-102 374.8 207 90.3
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 4.4e-102 374.8 200 94.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.6e-102 374.0 238 81.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 9.9e-102 373.6 207 89.9
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 2.2e-101 372.5 207 89.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 3.7e-101 371.7 207 89.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 6.4e-101 370.9 200 93.5
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.1e-100 370.2 210 88.1
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.4e-100 369.0 217 90.3
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 3.2e-100 368.6 207 88.9
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 5.4e-100 367.9 203 91.1
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 7.1e-100 367.5 210 87.6
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-99 366.3 200 91.5
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.1e-99 365.9 210 87.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 2.5e-97 359.0 227 81.5
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.2e-96 356.7 210 83.8
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 4.7e-96 354.8 214 84.1
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.4e-95 353.2 196 88.8
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.9e-93 345.5 253 72.7
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.1e-92 343.6 210 85.7
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 2.4e-92 342.4 207 79.7
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.7e-91 339.0 209 83.7
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-90 337.0 187 89.3
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 3.3e-89 332.0 215 80.5
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 5.3e-87 324.7 283 65.4
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 2.4e-84 315.8 209 79.9
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 5.4e-76 288.1 180 82.2
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.2e-75 287.0 209 69.9
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.5e-70 268.5 209 70.8
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.9e-66 255.4 134 97.0
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.1e-63 247.3 131 96.2
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 5.8e-62 241.5 126 96.0
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 6.1e-59 231.5 126 91.3
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 6.7e-58 228.0 133 85.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.6e-51 205.7 181 67.4
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 5.7e-49 198.4 171 63.7
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 5.1e-42 175.3 191 49.7
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 8.0e-35 151.4 80 92.5
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 5.2e-34 148.7 137 63.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.0e-33 146.7 178 51.7
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.6e-33 146.4 107 72.9
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 3.8e-29 132.5 70 90.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 2.7e-27 126.3 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.3e-26 123.2 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.3e-26 123.2 64 87.5
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.1e-23 114.4 110 51.8
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 7.2e-20 101.7 49 93.9
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.5e-17 91.7 47 97.9
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 7.5e-17 91.7 49 81.6
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.8e-16 89.7 102 59.8
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.9e-08 63.2 35 80.0
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 3.5e-06 56.2 74 51.4


User provided reference genes

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