Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 0.0e+00 1249.6 631 100.0
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 0.0e+00 1112.1 641 90.2
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 1.7e-303 1045.4 633 82.8
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 4.7e-293 1010.7 627 80.2
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 7.1e-289 996.9 632 79.9
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 1.9e-286 988.8 633 78.2
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 4.4e-283 977.6 630 78.4
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 3.2e-281 971.5 637 76.9
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 4.2e-281 971.1 628 78.8
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 5.3e-276 954.1 629 75.0
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 9.6e-270 933.3 626 75.1
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 2.1e-269 932.2 630 73.8
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 3.7e-269 931.4 637 73.3
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 5.3e-268 927.5 628 73.6
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 4.5e-267 924.5 630 73.5
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 1.3e-266 922.9 628 72.8
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.9e-265 919.1 630 72.2
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 9.3e-265 916.8 629 73.0
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 6.0e-264 914.1 663 70.7
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 3.9e-263 911.4 626 72.0
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 3.9e-263 911.4 632 71.5
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 4.3e-262 907.9 627 71.9
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 4.3e-262 907.9 626 72.0
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 5.6e-262 907.5 633 71.6
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 3.7e-261 904.8 626 71.1
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 3.8e-258 894.8 628 72.9
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 6.5e-258 894.0 605 73.6
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.5e-257 892.1 629 71.7
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.2e-256 889.8 631 69.9
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 2.7e-256 888.6 630 71.0
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 1.8e-255 885.9 628 70.7
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 2.3e-255 885.6 631 69.6
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 3.9e-255 884.8 629 70.1
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.7e-255 883.6 629 70.1
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 5.3e-252 874.4 628 69.3
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 5.3e-252 874.4 629 68.8
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 9.0e-252 873.6 607 71.5
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.2e-251 873.2 627 70.5
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.4e-251 871.7 628 69.3
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 4.5e-251 871.3 626 68.7
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 7.6e-251 870.5 628 69.9
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.7e-250 869.4 626 70.1
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 6.5e-250 867.5 625 69.4
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 3.2e-249 865.1 627 68.3
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 1.2e-248 863.2 628 68.5
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 1.2e-248 863.2 627 69.7
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.4e-247 859.8 628 67.4
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 6.7e-247 857.4 719 61.9
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.1e-244 850.1 628 66.7
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 3.1e-244 848.6 628 67.0
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.1e-244 848.6 625 66.6
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 6.9e-244 847.4 632 66.8
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.5e-243 846.3 628 66.4
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.5e-243 846.3 628 65.9
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 4.5e-243 844.7 628 68.3
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.3e-242 843.2 628 65.6
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 5.5e-241 837.8 628 65.3
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.0e-239 833.6 629 66.5
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 2.6e-238 828.9 627 66.2
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.5e-235 818.1 638 65.8
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.7e-232 808.9 641 65.4
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.7e-232 808.9 629 66.1
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 6.1e-232 807.7 631 63.9
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.0e-231 807.0 588 69.4
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 9.7e-230 800.4 633 63.3
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 9.7e-230 800.4 625 63.2
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 6.3e-229 797.7 629 63.4
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 8.2e-229 797.3 628 65.6
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.5e-225 785.8 647 62.9
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 5.9e-219 764.6 595 66.1
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 1.7e-218 763.1 643 61.7
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.5e-217 760.0 642 62.8
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.4e-214 748.8 616 63.0
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 4.2e-209 731.9 495 71.7
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 3.6e-208 728.8 632 61.7
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.4e-207 726.9 630 63.0
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 5.4e-204 714.9 741 53.3
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 3.4e-190 669.1 593 59.7
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.3e-186 657.1 642 56.2
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 1.2e-184 650.6 627 52.2
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 2.8e-184 649.4 633 56.7
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 3.6e-184 649.0 651 56.5
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.6e-163 580.5 402 71.1
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.7e-163 579.7 568 50.5
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 6.6e-162 575.1 568 50.2
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 3.8e-157 559.3 437 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.5e-150 537.3 627 45.6
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.4e-143 513.5 441 61.9
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 2.1e-139 500.4 628 44.9
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 3.5e-139 499.6 636 42.5
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.6e-136 490.7 295 84.1
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 5.9e-134 482.3 547 49.5
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 8.2e-128 461.8 628 43.8
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 3.4e-126 456.4 284 77.8
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 7.9e-123 445.3 310 72.9
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 6.5e-117 425.6 359 61.6
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.2e-115 421.4 291 72.2
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 8.5e-109 398.7 271 72.7
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 9.4e-100 368.6 227 83.3
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 5.4e-95 352.8 254 70.5
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.2e-88 330.9 247 64.4
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.2e-83 315.1 232 68.1
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 2.0e-81 307.8 197 74.6
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 3.6e-67 260.4 189 67.2
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 6.4e-64 249.6 135 92.6
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 4.0e-58 230.3 155 69.0
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 8.9e-58 229.2 133 88.7
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.5e-57 228.4 184 65.2
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.4e-55 221.1 163 69.9
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 7.1e-55 219.5 716 27.9
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.7e-54 217.6 171 65.5
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 4.6e-46 190.3 177 58.2
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 6.6e-45 186.4 619 27.3
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 9.9e-41 172.6 108 80.6
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 2.1e-35 154.8 118 62.7
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.8e-27 127.9 94 63.8
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.9e-21 107.5 98 55.1
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 2.2e-19 101.7 69 68.1
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 3.1e-18 97.8 58 79.3
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.9e-18 96.7 73 57.5
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 9.0e-18 96.3 129 44.2
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 2.7e-14 84.7 67 64.2
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 7.4e-12 76.6 74 51.4
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 9.7e-12 76.3 77 57.1
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.4e-10 72.4 64 60.9
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.5e-09 68.9 38 86.8
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 7.2e-07 60.1 51 60.8


User provided reference genes

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