Gene: Pp3c18_7140
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c18_7140
- Transcript Identifier Pp3c18_7140V3.2
- Gene Type Coding gene
- Location Chr18 : 5019812-5025488 : positive
Gene Family Information
- ID HOM05D006139
- #Genes/#Species 129/95
- Phylogenetic origin
- ID ORTHO05D007681
- #Genes/#Species 128/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c18_7140V3.2
- pacid 32981594
- alias Pp1s299_4V6
- alias Phpat.018G022800
- alias Phypa_60909
- uniprot A0A2K1J079
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071481 | IBA | GOA Database | cellular response to X-ray | |
| GO:0006303 | IBA IEA | GOA Database | double-strand break repair via nonhomologous end joining | |
| GO:0006303 | IEA | InterPro | double-strand break repair via nonhomologous end joining | |
| GO:0000723 | IBA IEA | GOA Database | telomere maintenance | |
| GO:0000723 | IEA | InterPro | telomere maintenance | |
| GO:0071480 | IBA | GOA Database | cellular response to gamma radiation | |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT1G16970 |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0032508 | IEA | GOA Database | DNA duplex unwinding |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0003684 | IEA | GOA Database | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003678 | IEA | GOA Database | DNA helicase activity | |
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0042162 | IBA IEA | GOA Database | telomeric DNA binding | |
| GO:0042162 | IEA | InterPro | telomeric DNA binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0003690 | IBA | GOA Database | double-stranded DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G16970 |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043564 | IBA IEA | GOA Database | Ku70:Ku80 complex | |
| GO:0043564 | IEA | InterPro | Ku70:Ku80 complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006165 | Ku70 |
| IPR027388 | Ku70, bridge and pillars domain superfamily |
| IPR036361 | SAP domain superfamily |
| IPR006164 | Ku70/Ku80 beta-barrel domain |
| IPR016194 | SPOC-like, C-terminal domain superfamily |
| IPR005161 | Ku70/Ku80, N-terminal alpha/beta |
| IPR005160 | Ku70/Ku80 C-terminal arm |
| IPR036465 | von Willebrand factor A-like domain superfamily |
| Mapman id | Description |
|---|---|
| 14.4.1.1 | DNA damage response.nonhomologous end-joining (NHEJ) repair.Ku70-Ku80 helicase complex.component KU70 |