Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 3.6e-183 644.8 331 100.0
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 4.7e-167 591.3 331 92.7
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.8e-150 536.2 333 82.6
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.4e-118 430.3 322 68.9
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 9.0e-118 427.6 326 67.8
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 5.8e-117 424.9 338 66.6
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 6.4e-116 421.4 329 67.8
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.1e-115 420.6 331 65.9
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.9e-115 419.9 329 66.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.9e-115 419.9 321 67.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 2.4e-115 419.5 328 66.2
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 7.1e-115 417.9 322 66.5
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 7.1e-115 417.9 332 66.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.2e-114 417.2 340 64.1
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.2e-114 417.2 326 65.6
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 2.7e-114 416.0 332 65.4
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.7e-114 416.0 330 66.1
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.5e-114 415.6 335 66.9
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.5e-114 415.6 326 65.0
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 4.6e-114 415.2 329 67.2
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 4.6e-114 415.2 329 66.0
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 6.0e-114 414.8 327 64.8
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.0e-113 414.1 309 69.9
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.8e-113 413.3 327 67.3
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.1e-113 411.8 332 66.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.7e-113 411.0 328 65.9
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-112 410.6 327 65.4
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.1e-112 410.6 327 66.1
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.5e-112 410.2 326 64.7
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.9e-112 409.8 331 65.0
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.9e-112 409.8 328 64.3
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-112 409.5 330 66.1
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.5e-112 409.5 322 66.1
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 4.3e-112 408.7 333 64.3
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.3e-112 408.7 327 65.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 9.6e-112 407.5 329 64.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.3e-111 407.1 327 65.1
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.6e-111 406.8 325 64.9
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.8e-111 406.0 337 63.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 6.2e-111 404.8 329 64.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.1e-111 404.4 327 65.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 8.1e-111 404.4 326 66.0
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-110 404.1 333 63.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.4e-110 403.7 315 67.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.4e-110 402.9 333 63.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.1e-110 402.5 349 62.8
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.6e-109 399.4 329 63.5
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.6e-109 399.4 327 64.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 5.8e-109 398.3 331 61.0
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 5.8e-109 398.3 324 63.9
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 7.6e-109 397.9 322 63.4
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 7.6e-109 397.9 330 62.1
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 1.3e-108 397.1 277 70.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.7e-108 396.7 317 64.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.7e-108 396.7 332 62.7
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.2e-108 396.4 347 60.8
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.2e-108 396.4 347 60.8
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.9e-108 396.0 330 64.8
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 3.8e-108 395.6 332 62.3
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 4.9e-108 395.2 326 62.3
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.1e-107 394.0 322 63.0
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.9e-107 393.3 330 64.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 3.2e-107 392.5 318 65.4
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 9.3e-107 391.0 343 60.3
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 9.3e-107 391.0 307 65.8
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.2e-106 390.6 267 71.9
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 3.5e-106 389.0 328 63.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.6e-106 388.7 335 63.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 4.6e-106 388.7 326 62.3
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.0e-106 388.3 309 67.3
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 3.9e-105 385.6 382 57.3
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.3e-104 382.1 320 62.2
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.1e-103 379.8 327 63.3
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.8e-103 379.4 267 70.4
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.8e-103 378.6 251 73.3
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 8.2e-103 377.9 322 62.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.4e-102 376.3 322 62.7
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 4.1e-102 375.6 324 61.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 5.3e-102 375.2 321 62.3
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.5e-101 373.6 322 61.8
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.0e-100 370.9 320 61.6
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.3e-100 370.5 318 60.1
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.2e-100 369.8 340 60.6
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 6.5e-100 368.2 322 61.2
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.1e-99 367.5 321 61.4
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.4e-99 367.1 322 61.2
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.2e-98 364.0 254 71.3
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 6.1e-98 361.7 323 61.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.3e-97 360.5 323 61.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 8.7e-97 357.8 323 60.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 2.5e-96 356.3 331 58.9
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 4.3e-96 355.5 291 66.7
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.3e-95 354.0 304 64.5
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.8e-95 352.8 414 51.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.2e-93 347.4 304 61.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 5.9e-93 345.1 327 58.4
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.5e-92 341.7 304 60.9
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.5e-92 341.3 228 74.1
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 3.2e-91 339.3 309 60.2
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 3.9e-89 332.4 293 63.1
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 9.7e-88 327.8 317 54.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.5e-85 320.5 316 55.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.9e-84 316.2 344 54.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 7.2e-83 311.6 285 59.3
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.2e-82 310.8 290 57.2
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 4.7e-82 308.9 330 51.8
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.2e-77 294.3 316 50.3
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.7e-76 290.4 235 67.7
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.6e-69 267.3 169 74.0
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 8.5e-68 261.5 338 46.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.5e-64 250.8 333 46.2
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.2e-58 231.1 304 46.4
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 6.3e-55 218.8 249 51.8
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 9.2e-54 214.9 251 44.6
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-50 204.1 200 58.0
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 7.5e-48 195.3 272 42.3
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.9e-47 192.6 136 65.4
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 2.7e-45 186.8 264 41.7
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 6.6e-44 182.2 210 50.0
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 5.8e-40 169.1 162 61.7
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.4e-38 163.7 274 40.5
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.3e-36 157.1 86 86.0
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.5e-35 154.5 157 58.6
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 3.3e-35 153.3 175 54.3
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.8e-34 150.2 106 73.6
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 8.1e-34 148.7 166 54.2
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 8.9e-33 145.2 204 46.6
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 2.6e-32 143.7 98 73.5
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 2.4e-30 137.1 74 85.1
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 5.1e-28 129.4 84 71.4
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.9e-27 127.5 85 69.4
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.0e-25 119.8 306 29.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 7.6e-24 115.5 85 68.2
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 5.4e-22 109.4 187 40.6
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 6.2e-18 95.9 70 62.9
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.2e-17 92.8 94 55.3
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-14 84.7 187 34.8
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.9e-14 84.3 69 66.7
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.0e-12 77.0 71 54.9
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 6.6e-12 75.9 61 57.4
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 8.7e-12 75.5 82 54.9
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.9e-06 57.8 36 75.0


User provided reference genes

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