Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb129190 Zea mays HOM05D001045 ORTHO05D004836 4.1e-37 157.5 79 100.0
Zm00001eb234620 Zea mays HOM05D001045 ORTHO05D004836 2.9e-30 134.8 78 84.6
Os02g0539600 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D004836 2.5e-26 121.7 78 80.8
MBI16_g26173_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 4.6e-20 100.9 73 64.4
Phvul.003G209600 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 7.8e-20 100.1 70 68.6
Glyma.17G128500 Glycine max HOM05D001045 ORTHO05D004836 1.3e-19 99.4 70 67.1
Sabra12G0070200 Salix brachista HOM05D001045 ORTHO05D004836 1.3e-19 99.4 70 65.7
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.7e-19 99.0 65 70.8
SGA_v2.0_scaffold215G42334 Striga asiatica HOM05D001045 ORTHO05D004836 1.7e-19 99.0 66 66.7
Thecc.03G126800 Theobroma cacao HOM05D001045 ORTHO05D004836 3.9e-19 97.8 78 60.3
VMungo1215G2889 Vigna mungo HOM05D001045 ORTHO05D004836 3.9e-19 97.8 70 65.7
CiPaw.12G041700 Carya illinoinensis HOM05D001045 ORTHO05D004836 5.1e-19 97.4 79 59.5
CDE04G0888 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 5.1e-19 97.4 70 62.9
Cc03_g13140 Coffea canephora HOM05D001045 ORTHO05D004836 5.1e-19 97.4 65 70.8
Potri.012G095800 Populus trichocarpa HOM05D001045 ORTHO05D004836 5.1e-19 97.4 65 67.7
RcHm_v2.0_Chr7g0190431 Rosa chinensis HOM05D001045 ORTHO05D004836 5.1e-19 97.4 75 60.0
Aqoxy3G01499 Aquilegia oxysepala HOM05D001045 ORTHO05D004836 1.1e-18 96.3 75 60.0
arahy.Tifrunner.gnm1.ann1.3PZ9PI Arachis hypogaea HOM05D001045 ORTHO05D004836 1.1e-18 96.3 65 69.2
arahy.Tifrunner.gnm1.ann1.B3AG7P Arachis hypogaea HOM05D001045 ORTHO05D004836 1.1e-18 96.3 65 67.7
Duzib205G1644 Durio zibethinus HOM05D001045 ORTHO05D004836 1.1e-18 96.3 78 60.3
Eucgr.B00129 Eucalyptus grandis HOM05D001045 ORTHO05D004836 1.5e-18 95.9 80 61.2
Lj1g0009758 Lotus japonicus HOM05D001045 ORTHO05D004836 1.5e-18 95.9 70 67.1
TWI14G1089 Tripterygium wilfordii HOM05D001045 ORTHO05D004836 1.5e-18 95.9 71 60.6
arahy.Tifrunner.gnm1.ann1.XN7UED Arachis hypogaea HOM05D001045 ORTHO05D004836 1.9e-18 95.5 65 67.7
Oeu030250.2 Olea europaea HOM05D001045 ORTHO05D004836 1.9e-18 95.5 64 62.5
MSTRG.22907 Avicennia marina HOM05D001045 ORTHO05D004836 2.5e-18 95.1 66 62.1
Gorai.003G119600 Gossypium raimondii HOM05D001045 ORTHO05D004836 2.5e-18 95.1 77 57.1
MD06G1143600 Malus domestica HOM05D001045 ORTHO05D004836 2.5e-18 95.1 68 63.2
CDE07G0011 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 3.3e-18 94.7 70 60.0
Sc04g0000750 Simmondsia chinensis HOM05D001045 ORTHO05D004836 3.3e-18 94.7 76 60.5
Sed0018235 Sechium edule HOM05D001045 ORTHO05D004836 4.3e-18 94.4 75 58.7
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 4.3e-18 94.4 71 63.4
DCAR_026220 Daucus carota HOM05D001045 ORTHO05D004836 5.6e-18 94.0 75 60.0
FAN04G1508 Fragaria x ananassa HOM05D001045 ORTHO05D004836 5.6e-18 94.0 67 62.7
FAN08G1251 Fragaria x ananassa HOM05D001045 ORTHO05D004836 5.6e-18 94.0 67 62.7
FAN13G2667 Fragaria x ananassa HOM05D001045 ORTHO05D004836 5.6e-18 94.0 67 62.7
Glyma.04G194600 Glycine max HOM05D001045 ORTHO05D004836 5.6e-18 94.0 70 65.7
Manes.14G052700 Manihot esculenta HOM05D001045 ORTHO05D004836 5.6e-18 94.0 75 57.3
TAR629G1776 Trochodendron aralioides HOM05D001045 ORTHO05D004836 5.6e-18 94.0 65 67.7
FvH4_5g07980 Fragaria vesca HOM05D001045 ORTHO05D004836 7.3e-18 93.6 67 61.2
FAN18G4157 Fragaria x ananassa HOM05D001045 ORTHO05D004836 7.3e-18 93.6 67 62.7
Aa31LG1G18610 Aethionema arabicum HOM05D001045 ORTHO05D004836 9.6e-18 93.2 78 57.7
AT5G63420 Arabidopsis thaliana HOM05D001045 ORTHO05D004836 9.6e-18 93.2 75 60.0
COL.COLO4_28086 Corchorus olitorius HOM05D001045 ORTHO05D004836 9.6e-18 93.2 78 57.7
PSO017G5689 Papaver somniferum HOM05D001045 ORTHO05D004836 9.6e-18 93.2 77 62.3
Atru.chr9.1079 Acer truncatum HOM05D001045 ORTHO05D004836 1.3e-17 92.8 77 55.8
Migut.I00512 Erythranthe guttata HOM05D001045 ORTHO05D004836 1.3e-17 92.8 71 59.2
Ah.11g045420 Amaranthus hybridus HOM05D001045 ORTHO05D004836 1.6e-17 92.4 66 62.1
ATR0680G066 Amborella trichopoda HOM05D001045 ORTHO05D004836 1.6e-17 92.4 64 62.5
CARHR277280 Cardamine hirsuta HOM05D001045 ORTHO05D004836 1.6e-17 92.4 64 65.6
Haze_07234 Corylus avellana HOM05D001045 ORTHO05D004836 1.6e-17 92.4 79 53.2
Nn3g16511 Nelumbo nucifera HOM05D001045 ORTHO05D004836 1.6e-17 92.4 79 59.5
THA.LOC104798948 Tarenaya hassleriana HOM05D001045 ORTHO05D004836 1.6e-17 92.4 73 58.9
unitig_27.g25101 Utricularia gibba HOM05D001045 ORTHO05D004836 1.6e-17 92.4 75 60.0
HPP92_008938 Vanilla planifolia HOM05D001045 ORTHO05D004836 1.6e-17 92.4 64 68.8
Carub.0008s2413 Capsella rubella HOM05D001045 ORTHO05D004836 2.1e-17 92.0 75 57.3
Cpa.g.sc13.140 Carica papaya HOM05D001045 ORTHO05D004836 2.1e-17 92.0 78 59.0
FAN04G1284 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.1e-17 92.0 67 61.2
Gohir.A03G053500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.1e-17 92.0 77 55.8
Gohir.D03G113500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.1e-17 92.0 77 55.8
HanXRQChr03g0064991 Helianthus annuus HOM05D001045 ORTHO05D004836 2.1e-17 92.0 64 65.6
MBI11_g06773_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 2.1e-17 92.0 71 60.6
vmacro19213 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.1e-17 92.0 65 66.2
EL10As4g23417 Beta vulgaris HOM05D001045 ORTHO05D004836 2.8e-17 91.7 65 63.1
Thhalv10003624m.g Eutrema salsugineum HOM05D001045 ORTHO05D004836 2.8e-17 91.7 75 54.7
PSO478G0896 Papaver somniferum HOM05D001045 ORTHO05D004836 2.8e-17 91.7 78 60.3
QL10p004119 Quercus lobata HOM05D001045 ORTHO05D004836 2.8e-17 91.7 68 60.3
Cfa018840 Carpinus fangiana HOM05D001045 ORTHO05D004836 3.6e-17 91.3 79 51.9
Lalb_Chr11g0069641 Lupinus albus HOM05D001045 ORTHO05D004836 3.6e-17 91.3 65 66.2
TPR.G26154 Trifolium pratense HOM05D001045 ORTHO05D004836 3.6e-17 91.3 68 63.2
Prupe.5G152800 Prunus persica HOM05D001045 ORTHO05D004836 4.8e-17 90.9 76 57.9
ClCG06G017790 Citrullus lanatus HOM05D001045 ORTHO05D004836 6.2e-17 90.5 75 54.7
MELO3C026230.2 Cucumis melo HOM05D001045 ORTHO05D004836 6.2e-17 90.5 78 55.1
TAR371G0766 Trochodendron aralioides HOM05D001045 ORTHO05D004836 6.2e-17 90.5 68 64.7
AL8G40490 Arabidopsis lyrata HOM05D001045 ORTHO05D004836 8.1e-17 90.1 75 54.7
Dinv04874 Davidia involucrata HOM05D001045 ORTHO05D004836 8.1e-17 90.1 79 55.7
Lalb_Chr23g0273561 Lupinus albus HOM05D001045 ORTHO05D004836 8.1e-17 90.1 65 64.6
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 1.1e-16 89.7 64 60.9
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 1.1e-16 89.7 64 60.9
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 1.1e-16 89.7 64 60.9
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 1.1e-16 89.7 64 60.9
Medtr3g089020 Medicago truncatula HOM05D001045 ORTHO05D004836 1.1e-16 89.7 69 60.9
Sp2g26510 Schrenkiella parvula HOM05D001045 ORTHO05D004836 1.1e-16 89.7 64 60.9
Hund02428 Selenicereus undatus HOM05D001045 ORTHO05D004836 1.1e-16 89.7 75 56.0
BcaC01g02587 Brassica carinata HOM05D001045 ORTHO05D004836 1.4e-16 89.4 64 59.4
Dinv11158 Davidia involucrata HOM05D001045 ORTHO05D004836 1.4e-16 89.4 65 61.5
Psat5g139840 Pisum sativum HOM05D001045 ORTHO05D004836 1.4e-16 89.4 68 61.8
Potri.015G093600 Populus trichocarpa HOM05D001045 ORTHO05D004836 1.4e-16 89.4 77 54.5
Lsat_1_v5_gn_1_81241 Lactuca sativa HOM05D001045 ORTHO05D004836 1.8e-16 89.0 64 62.5
PGR083G0639 Punica granatum HOM05D001045 ORTHO05D004836 1.8e-16 89.0 70 57.1
Actinidia15837 Actinidia chinensis HOM05D001045 ORTHO05D004836 2.4e-16 88.6 65 61.5
CANSAT80G0692 Cannabis sativa HOM05D001045 ORTHO05D004836 3.1e-16 88.2 75 53.3
ECA240G2390 Erigeron canadensis HOM05D001045 ORTHO05D004836 3.1e-16 88.2 64 60.9
Ciclev10018763m.g Citrus clementina HOM05D001045 ORTHO05D004836 5.3e-16 87.4 70 52.9
CsaV3_1G000660 Cucumis sativus L. HOM05D001045 ORTHO05D004836 6.9e-16 87.0 78 53.8
Glyma.06G171400 Glycine max HOM05D001045 ORTHO05D004836 6.9e-16 87.0 65 64.6
DCAR_016404 Daucus carota HOM05D001045 ORTHO05D004836 9.0e-16 86.7 61 67.2
Peaxi162Scf00089g00522 Petunia axillaris HOM05D001045 ORTHO05D004836 9.0e-16 86.7 75 53.3
Phvul.009G167400 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 9.0e-16 86.7 70 60.0
Sabra15G0115200 Salix brachista HOM05D001045 ORTHO05D004836 9.0e-16 86.7 77 53.2
Gohir.D07G056200 Gossypium hirsutum HOM05D001045 ORTHO05D004836 1.2e-15 86.3 65 61.5
Rhsim08G0188700 Rhododendron simsii HOM05D001045 ORTHO05D004836 1.2e-15 86.3 65 61.5
Nitab4.5_0003005g0050 Nicotiana tabacum HOM05D001045 ORTHO05D004836 1.5e-15 85.9 71 54.9
MD14G1158900 Malus domestica HOM05D001045 ORTHO05D004836 2.0e-15 85.5 68 58.8
Actinidia25588 Actinidia chinensis HOM05D001045 ORTHO05D004836 2.6e-15 85.1 65 60.0
Gorai.001G059600 Gossypium raimondii HOM05D001045 ORTHO05D004836 2.6e-15 85.1 65 60.0
Ca_24509_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 4.5e-15 84.3 68 57.4
Gohir.A07G051700 Gossypium hirsutum HOM05D001045 ORTHO05D004836 4.5e-15 84.3 65 60.0
Nitab4.5_0003680g0020 Nicotiana tabacum HOM05D001045 ORTHO05D004836 5.8e-15 84.0 71 54.9
Solyc03g111260.3 Solanum lycopersicum HOM05D001045 ORTHO05D004836 5.8e-15 84.0 71 54.9
Sopen03g030390 Solanum pennellii HOM05D001045 ORTHO05D004836 5.8e-15 84.0 71 54.9
PGSC0003DMG401015244 Solanum tuberosum HOM05D001045 ORTHO05D004836 7.6e-15 83.6 71 54.9
Ca_00917_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 2.9e-14 81.6 75 52.0
vmacro16670 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.9e-14 81.6 64 59.4
CSS0020803 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D004836 3.8e-14 81.3 71 57.7
CAN.G352.26 Capsicum annuum HOM05D001045 ORTHO05D004836 8.4e-14 80.1 71 53.5
Peaxi162Scf00536g00312 Petunia axillaris HOM05D001045 ORTHO05D004836 1.9e-13 79.0 79 49.4
Psat4g062560 Pisum sativum HOM05D001045 ORTHO05D004836 1.0e-11 73.2 67 52.2
Actinidia36799 Actinidia chinensis HOM05D001045 ORTHO05D004836 3.0e-11 71.6 65 49.2
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 1.1e-10 69.7 65 47.7
AUR62029637 Chenopodium quinoa HOM05D001045 ORTHO05D004836 6.2e-09 63.9 41 68.3
AagrBONN_evm.TU.Sc2ySwM_228.529 Anthoceros agrestis HOM05D000547 ORTHO05D013704 5.8e-07 57.4 74 37.8
Lj9C477G11 Lonicera japonica HOM05D001045 ORTHO05D004836 5.8e-07 57.4 38 65.8
SEGI_06928 Sequoiadendron giganteum HOM05D000547 ORTHO05D013704 7.6e-07 57.0 81 42.0
Pp3c15_19980 Physcomitrium patens HOM05D000547 ORTHO05D013704 9.9e-07 56.6 68 38.2
SEGI_06190 Sequoiadendron giganteum HOM05D000547 ORTHO05D013704 2.9e-06 55.1 63 41.3
Mapoly0119s0048 Marchantia polymorpha HOM05D000547 ORTHO05D013704 4.9e-06 54.3 68 41.2
SEGI_09008 Sequoiadendron giganteum HOM05D000547 ORTHO05D013704 6.4e-06 53.9 74 39.2
SEGI_02452 Sequoiadendron giganteum HOM05D000547 ORTHO05D013704 8.4e-06 53.5 82 40.2


User provided reference genes

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