Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 5.2e-229 797.3 398 100.0
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 1.4e-197 693.0 399 87.2
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 2.5e-154 549.3 418 65.6
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.5e-154 549.3 417 65.2
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.5e-154 549.3 410 65.1
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 5.5e-154 548.1 410 66.1
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 2.1e-153 546.2 414 64.0
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.0e-152 543.9 415 65.1
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.8e-152 543.1 414 64.5
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.3e-152 542.7 404 65.6
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 3.0e-152 542.3 407 65.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 6.7e-152 541.2 415 65.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 8.8e-152 540.8 408 66.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 1.5e-151 540.0 413 64.9
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 2.0e-151 539.7 416 64.4
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 4.3e-151 538.5 416 64.9
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 4.3e-151 538.5 409 65.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.7e-151 538.1 418 63.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 9.7e-151 537.3 409 64.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 9.7e-151 537.3 409 64.8
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 1.3e-150 537.0 413 64.4
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.7e-150 536.6 409 64.8
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 1.7e-150 536.6 407 64.6
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 2.2e-150 536.2 413 65.1
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.2e-150 536.2 410 64.9
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 2.8e-150 535.8 413 64.9
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.7e-150 535.4 409 64.5
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.7e-150 535.4 409 64.5
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 3.7e-150 535.4 409 64.5
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.3e-150 534.6 411 63.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 6.3e-150 534.6 416 64.9
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 8.2e-150 534.3 409 64.8
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 8.2e-150 534.3 408 65.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 1.8e-149 533.1 411 63.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 2.4e-149 532.7 413 63.9
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.1e-149 532.3 409 64.3
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.1e-149 532.3 410 63.4
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 4.1e-149 531.9 410 63.9
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 5.3e-149 531.6 399 64.9
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 5.3e-149 531.6 413 63.9
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 6.9e-149 531.2 410 64.1
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 6.9e-149 531.2 404 65.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 1.2e-148 530.4 403 64.5
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 2.0e-148 529.6 403 65.0
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 2.6e-148 529.3 411 62.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 2.6e-148 529.3 406 64.0
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 2.6e-148 529.3 409 64.3
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.6e-148 529.3 413 63.7
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 7.7e-148 527.7 398 64.1
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 1.0e-147 527.3 414 63.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 1.7e-147 526.6 416 64.4
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 1.7e-147 526.6 416 63.2
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 1.7e-147 526.6 408 64.2
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 5.0e-147 525.0 414 64.5
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 8.5e-147 524.2 416 63.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 8.5e-147 524.2 412 61.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 3.2e-146 522.3 413 63.0
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 3.2e-146 522.3 413 62.2
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 5.5e-146 521.5 411 63.7
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 7.2e-146 521.2 417 62.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 9.4e-146 520.8 409 63.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 1.6e-145 520.0 412 62.9
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 2.7e-145 519.2 413 63.2
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 2.7e-145 519.2 413 62.7
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 2.7e-145 519.2 417 60.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.6e-145 518.8 412 62.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 4.7e-145 518.5 413 63.2
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 7.9e-145 517.7 416 61.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 1.0e-144 517.3 413 63.4
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 2.3e-144 516.2 411 59.6
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 3.0e-144 515.8 408 62.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 3.0e-144 515.8 410 61.2
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 5.1e-144 515.0 418 60.5
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 5.1e-144 515.0 363 66.4
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 8.8e-144 514.2 416 60.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.0e-143 513.1 420 60.2
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 2.6e-143 512.7 413 62.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 3.3e-143 512.3 416 60.3
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 5.7e-143 511.5 413 62.2
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 7.4e-143 511.1 412 60.4
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 7.4e-143 511.1 425 61.4
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 9.7e-143 510.8 413 61.0
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 1.3e-142 510.4 406 61.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 1.3e-142 510.4 419 59.4
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 2.2e-142 509.6 420 61.4
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 2.8e-142 509.2 421 61.5
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 2.8e-142 509.2 421 61.5
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 3.7e-142 508.8 420 61.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 3.7e-142 508.8 409 61.4
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.4e-141 506.9 425 60.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 5.3e-141 505.0 422 60.7
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 7.0e-141 504.6 416 60.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 9.1e-141 504.2 431 60.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 1.5e-140 503.4 432 60.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.7e-139 500.0 409 59.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 1.7e-139 500.0 418 61.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 2.9e-139 499.2 430 59.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 3.8e-139 498.8 464 56.5
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.8e-139 498.8 488 53.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 3.2e-138 495.7 399 61.4
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 3.2e-138 495.7 405 63.7
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 4.2e-138 495.4 405 60.7
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 5.5e-138 495.0 405 61.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.5e-138 495.0 405 61.5
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 9.4e-138 494.2 406 62.3
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 8.0e-137 491.1 412 59.5
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-136 488.4 420 59.3
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 5.2e-136 488.4 414 60.6
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 9.7e-135 484.2 410 61.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 2.2e-134 483.0 409 59.2
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 2.4e-133 479.6 405 59.0
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 5.9e-132 474.9 503 49.3
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 1.9e-130 469.9 415 59.0
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 7.5e-127 458.0 257 91.8
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 1.4e-125 453.8 410 57.3
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.3e-123 447.2 253 90.5
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.3e-123 447.2 253 90.5
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 3.8e-123 445.7 389 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 1.3e-118 430.6 425 52.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.1e-117 427.6 348 61.5
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 1.4e-117 427.2 419 54.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 5.5e-114 415.2 427 52.9
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 5.7e-111 405.2 415 53.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 7.8e-108 394.8 277 69.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 4.9e-94 349.0 239 69.9
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.4e-93 345.5 239 68.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.0e-91 341.3 240 68.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 4.4e-87 325.9 240 65.4
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 3.0e-83 313.2 357 48.7
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.6e-82 308.1 267 56.6
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.2e-80 302.4 249 62.2
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.3e-74 283.1 159 89.9
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.3e-74 283.1 159 89.9
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 4.8e-73 279.3 253 58.5
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.6e-68 264.2 139 94.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 6.9e-64 248.8 405 37.3
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 7.9e-60 235.3 361 39.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 9.0e-56 221.9 290 43.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.8e-54 216.5 411 35.5
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.1e-50 204.9 181 51.9
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.4e-48 197.2 99 99.0
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.7e-41 173.3 118 66.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.2e-41 172.2 120 68.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.5e-39 167.9 123 64.2
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.0e-38 162.9 238 43.3
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.1e-34 151.8 166 45.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 3.3e-34 150.2 122 59.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.4e-31 140.2 111 63.1
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.0e-30 136.3 344 27.9
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 3.2e-29 133.7 206 39.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.6e-28 130.2 93 71.0
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.3e-25 121.7 276 31.9
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 7.2e-21 105.9 134 42.5
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 3.6e-20 103.6 122 42.6
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.0e-19 100.1 110 40.9
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.2e-17 94.4 120 39.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.5e-13 80.9 50 72.0
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 3.2e-13 80.5 306 25.8
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.0e-10 71.2 81 49.4


User provided reference genes

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