Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 9.7e-145 516.9 285 100.0
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.3e-125 453.4 286 88.1
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.2e-99 367.1 284 70.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 2.0e-97 359.8 289 71.3
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 3.7e-96 355.5 289 70.6
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 7.8e-94 347.8 289 68.5
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.3e-93 347.1 289 68.5
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.7e-93 346.7 286 68.2
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.9e-93 345.5 288 71.2
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.5e-92 343.6 286 67.8
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 7.3e-92 341.3 265 73.6
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-91 340.5 281 65.5
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-91 340.5 281 65.5
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.2e-91 340.5 282 65.6
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.6e-91 340.1 290 64.8
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.6e-91 340.1 287 68.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.6e-91 340.1 286 64.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.1e-91 339.7 281 65.5
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 2.1e-91 339.7 286 67.1
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 2.1e-91 339.7 290 70.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.8e-91 339.3 245 76.3
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 4.7e-91 338.6 246 74.0
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 8.1e-91 337.8 280 67.5
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.1e-90 337.4 285 67.4
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.4e-90 337.0 288 66.0
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.3e-90 336.3 286 66.8
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 3.1e-90 335.9 286 68.2
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 4.0e-90 335.5 281 69.4
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.0e-90 335.5 282 64.5
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.0e-90 335.5 288 63.9
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 6.8e-90 334.7 289 66.8
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 6.8e-90 334.7 285 68.4
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 8.9e-90 334.3 292 64.0
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 4.4e-89 332.0 287 65.9
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.3e-88 330.5 308 63.6
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.7e-88 330.1 290 66.9
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.2e-88 329.7 268 66.0
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.9e-88 329.3 305 61.6
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 3.7e-88 328.9 288 63.5
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.7e-88 328.9 278 67.3
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 6.4e-88 328.2 288 63.9
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 6.4e-88 328.2 286 67.5
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 6.4e-88 328.2 264 66.7
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 8.3e-88 327.8 302 61.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.1e-87 327.4 275 68.7
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.1e-87 327.4 279 67.4
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.4e-87 327.0 288 65.3
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 4.1e-87 325.5 287 62.4
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.1e-87 325.5 288 63.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 7.1e-87 324.7 246 69.9
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.2e-86 323.9 246 69.9
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.1e-86 323.2 286 66.4
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.7e-86 322.8 246 70.3
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.7e-86 322.8 261 67.4
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.7e-86 322.8 286 66.4
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.7e-86 322.8 264 65.5
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.7e-86 322.8 288 64.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 3.5e-86 322.4 286 62.9
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.5e-86 322.4 296 65.5
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 4.6e-86 322.0 287 62.0
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.6e-86 322.0 288 62.5
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 6.0e-86 321.6 284 62.3
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 6.0e-86 321.6 275 67.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 7.8e-86 321.2 241 71.0
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 7.8e-86 321.2 290 63.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 7.8e-86 321.2 288 61.8
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.0e-85 320.9 296 63.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.0e-85 320.9 258 69.8
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.0e-85 320.9 280 65.7
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.0e-85 320.9 272 64.3
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-85 320.5 255 70.2
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-85 320.5 255 70.6
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.3e-85 320.5 278 67.3
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.3e-85 320.5 315 61.9
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.7e-85 320.1 255 67.8
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.7e-85 320.1 255 67.8
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.7e-85 320.1 284 63.7
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.3e-85 319.7 258 69.4
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.0e-85 319.3 243 70.4
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 3.9e-85 318.9 255 67.5
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 5.1e-85 318.5 256 69.9
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 6.6e-85 318.2 241 73.4
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 6.6e-85 318.2 241 73.4
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 8.6e-85 317.8 264 69.3
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 8.6e-85 317.8 291 64.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.1e-84 317.4 255 67.5
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.1e-84 317.4 241 73.4
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.1e-84 317.4 241 73.4
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.5e-84 317.0 286 66.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 3.3e-84 315.8 277 64.3
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 4.3e-84 315.5 279 63.8
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 7.3e-84 314.7 276 63.4
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.6e-83 313.5 288 63.5
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 6.2e-83 311.6 241 71.8
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 4.9e-80 302.0 274 62.8
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 8.4e-80 301.2 288 61.8
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.4e-79 300.4 241 67.6
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.9e-79 300.1 260 69.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 2.4e-79 299.7 271 63.1
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 2.1e-78 296.6 286 59.4
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.5e-78 295.8 275 61.5
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.3e-77 293.1 287 59.6
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.9e-77 292.4 251 69.7
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 5.6e-76 288.5 286 62.9
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 4.7e-75 285.4 272 62.5
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.2e-73 280.8 210 75.7
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.0e-69 267.7 260 60.0
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.7e-69 266.9 237 68.4
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.3e-68 262.7 262 62.2
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 6.9e-66 255.0 153 89.5
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 1.2e-65 254.2 151 88.7
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.2e-64 250.0 280 56.1
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.4e-64 248.4 291 52.9
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 8.4e-64 248.1 281 54.1
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 7.1e-63 245.0 288 52.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.9e-55 220.3 279 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.1e-50 204.5 205 55.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 5.8e-49 198.7 299 44.8
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.0e-48 198.0 151 74.2
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.4e-47 194.1 229 53.3
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.9e-47 193.7 154 65.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 2.7e-46 189.9 123 78.9
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-42 177.9 151 64.2
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.0e-37 161.4 154 59.7
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.7e-35 154.1 185 52.4
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 6.3e-35 152.1 205 47.3
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.1e-34 151.4 166 53.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.1e-34 148.3 166 53.0
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.6e-33 146.7 235 40.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.7e-29 132.1 67 94.0
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.7e-29 132.1 105 63.8
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.6e-25 120.2 289 34.9
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.6e-17 94.4 140 45.0
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 6.5e-16 89.0 73 58.9
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 3.7e-11 73.2 42 78.6
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.4e-10 71.2 136 39.7
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.4e-10 71.2 54 66.7
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.9e-07 60.8 134 38.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.2e-06 58.2 73 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 8.0e-06 55.5 172 28.5


User provided reference genes

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