Gene: AT1G09760

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G09760
  • Transcript Identifier AT1G09760.1
  • Gene Type Coding gene
  • Location Chr1 : 3159476-3161603 : negative

Gene Family Information

  • ID HOM05D005498
  • #Genes/#Species 139/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G09760.1
  • symbol U2A'
  • Alias U2A',U2 small nuclear ribonucleoprotein A
  • uniprot P43333

Descriptions

  • Description U2 small nuclear ribonucleoprotein A
  • Computational description U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IDA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0009409
IEP
GOA Databaseresponse to cold

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030620
IEA
Gene OntologyU2 snRNA binding
GO:0030620
IEA
InterProU2 snRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus2
GO:0005829
IDA
GOA Databasecytosol
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0015030
IDA
Gene OntologyCajal body1
GO:0005737
IDA
Gene Ontologycytoplasm1
GO:0005654
IDA
Gene Ontologynucleoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032675 Leucine-rich repeat domain superfamily
IPR044640 U2 small nuclear ribonucleoprotein A'
IPR003603 U2A'/phosphoprotein 32 family A, C-terminal
Mapman id Description
16.2.1.2.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).protein factor (U2A)