Gene: SGA_v2.0_scaffold5G02818

General Information

Structural Information

Species Striga asiatica
Gene Identifier SGA_v2.0_scaffold5G02818
Transcript Identifier SGA_v2.0_scaffold5T02818
Gene Type Coding gene
Location scaffold5 : 1884237-1887099 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005498
#Genes/#Species 139/91
Phylogenetic origin

ID ORTHO05D006719
#Genes/#Species 139/90
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

Descriptions

Short descriptions
Ortholog descriptions

product U2 small nuclear ribonucleoprotein A, putative

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT1G09760

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030620	IEA	InterPro	U2 snRNA binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G09760
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT1G09760
GO:0015030	ISO	PLAZA Integrative Orthology	Cajal body	AT1G09760
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G09760
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT1G09760
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT1G09760

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR044640	U2 small nuclear ribonucleoprotein A'
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal
IPR032675	Leucine-rich repeat domain superfamily

Mapman id	Description
16.2.1.2.1	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).protein factor (U2A)