Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 7.2e-153 543.9 278 100.0
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.1e-132 476.9 242 98.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.1e-132 476.9 242 98.8
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.0e-127 458.4 257 91.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 4.9e-125 451.4 279 83.5
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.2e-108 394.0 287 68.6
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 9.2e-108 394.0 279 71.0
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.1e-107 392.9 279 69.9
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 2.1e-107 392.9 279 69.9
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 2.1e-107 392.9 279 69.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 2.7e-107 392.5 286 69.6
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 3.5e-107 392.1 279 70.3
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 4.6e-107 391.7 279 70.6
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 4.6e-107 391.7 279 70.3
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 7.8e-107 391.0 279 70.3
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 7.8e-107 391.0 279 69.2
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 1.0e-106 390.6 279 69.9
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.0e-106 390.6 279 69.5
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 1.3e-106 390.2 279 69.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 1.7e-106 389.8 286 69.2
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.3e-106 389.4 279 69.5
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 3.0e-106 389.0 279 69.9
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 3.0e-106 389.0 279 69.9
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.0e-106 389.0 279 69.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.0e-106 389.0 279 69.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 5.1e-106 388.3 279 69.9
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.1e-106 388.3 279 69.9
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 6.6e-106 387.9 279 70.6
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 6.6e-106 387.9 279 68.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 8.7e-106 387.5 279 69.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 8.7e-106 387.5 279 68.1
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 8.7e-106 387.5 279 70.3
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 8.7e-106 387.5 279 71.0
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.1e-105 387.1 279 69.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.1e-105 387.1 279 68.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 1.5e-105 386.7 279 69.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 1.5e-105 386.7 279 70.3
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 2.5e-105 386.0 279 69.5
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.3e-105 385.6 279 68.1
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 3.3e-105 385.6 279 69.5
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 3.3e-105 385.6 279 69.2
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 3.3e-105 385.6 279 69.5
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 4.3e-105 385.2 279 69.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 4.3e-105 385.2 279 69.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 5.6e-105 384.8 279 69.9
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 5.6e-105 384.8 279 69.9
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 5.6e-105 384.8 279 69.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 5.6e-105 384.8 279 69.9
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 5.6e-105 384.8 279 70.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 7.3e-105 384.4 278 67.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 9.6e-105 384.0 279 67.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 9.6e-105 384.0 279 70.3
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 1.2e-104 383.6 279 70.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.6e-104 383.3 279 68.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 1.6e-104 383.3 279 67.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.6e-104 383.3 287 67.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 2.8e-104 382.5 279 67.4
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 3.6e-104 382.1 279 68.5
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 3.6e-104 382.1 279 68.5
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 4.7e-104 381.7 279 68.8
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 4.7e-104 381.7 279 67.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.7e-104 381.7 287 66.2
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 6.2e-104 381.3 279 67.4
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 6.2e-104 381.3 279 68.5
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 6.2e-104 381.3 279 68.1
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 6.2e-104 381.3 279 69.9
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 8.1e-104 380.9 279 67.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 1.1e-103 380.6 279 67.7
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 1.4e-103 380.2 279 67.4
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 1.4e-103 380.2 279 66.7
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 1.4e-103 380.2 279 69.9
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.8e-103 379.8 279 69.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 1.8e-103 379.8 279 69.2
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 2.4e-103 379.4 279 68.5
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 2.4e-103 379.4 279 68.8
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 2.4e-103 379.4 279 68.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.4e-103 379.4 279 68.1
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 3.1e-103 379.0 289 66.4
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 3.1e-103 379.0 279 67.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 4.0e-103 378.6 279 66.7
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 4.0e-103 378.6 279 66.7
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 9.0e-103 377.5 279 66.3
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 9.0e-103 377.5 279 66.3
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 1.5e-102 376.7 279 68.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 1.5e-102 376.7 279 67.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 2.6e-102 375.9 279 66.3
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 3.4e-102 375.6 288 68.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 3.4e-102 375.6 279 64.9
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 4.4e-102 375.2 288 68.1
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 9.9e-102 374.0 273 68.9
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 9.9e-102 374.0 279 67.7
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 9.9e-102 374.0 287 66.2
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 8.4e-101 370.9 279 66.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 1.1e-100 370.5 287 65.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.4e-100 370.2 279 67.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 2.4e-100 369.4 279 64.9
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 9.3e-100 367.5 279 64.9
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.2e-99 367.1 279 65.2
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 2.7e-99 365.9 279 65.2
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 6.0e-99 364.8 279 64.9
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 7.8e-99 364.4 279 65.6
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 8.7e-98 360.9 279 64.5
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 7.3e-97 357.8 279 64.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 7.3e-97 357.8 279 64.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 1.3e-96 357.1 279 64.5
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.3e-96 357.1 325 58.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 1.6e-96 356.7 279 65.9
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.1e-96 356.3 354 54.5
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 3.6e-96 355.5 305 60.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.8e-96 355.1 283 65.0
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.0e-94 349.7 279 63.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 3.4e-94 349.0 261 65.9
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 9.9e-94 347.4 296 60.8
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.7e-93 346.7 261 65.5
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.7e-93 346.7 261 66.7
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 3.8e-93 345.5 279 64.5
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 1.9e-92 343.2 279 62.0
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.1e-91 339.7 270 64.4
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 4.6e-91 338.6 279 63.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 4.6e-91 338.6 279 63.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 2.5e-89 332.8 301 58.5
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 3.3e-89 332.4 279 61.3
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 4.3e-89 332.0 286 61.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 8.1e-88 327.8 279 60.9
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 2.5e-84 316.2 262 61.1
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.2e-84 315.8 279 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 4.2e-84 315.5 279 58.1
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.6e-83 312.0 379 47.5
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 1.6e-75 287.0 279 54.5
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 9.7e-73 277.7 162 85.2
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 9.7e-73 277.7 162 85.2
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.2e-72 276.6 139 97.8
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.8e-71 273.5 279 50.5
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.3e-56 224.2 279 47.7
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 6.1e-51 205.3 104 99.0
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.2e-46 191.0 142 66.2
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.6e-46 189.9 145 64.1
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 8.8e-42 174.9 276 39.1
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.7e-40 170.6 157 56.7
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-38 164.5 159 48.4
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.9e-38 162.2 118 63.6
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.7e-37 160.6 206 45.1
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 4.2e-36 156.0 94 79.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.0e-34 151.4 314 32.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.3e-32 144.4 166 48.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.3e-24 115.5 67 80.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.4e-23 113.6 302 31.1
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.8e-22 108.6 274 28.8
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.3e-21 107.8 72 69.4
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 7.8e-14 82.0 47 83.0
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.1e-12 78.2 53 75.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.1e-10 70.1 44 72.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.2e-10 69.3 86 48.8
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-09 68.2 43 79.1
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 1.3e-08 64.7 101 32.7
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 4.1e-07 59.7 74 47.3


User provided reference genes

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