Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 2.9e-267 924.9 544 100.0
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 3.5e-236 821.6 513 90.4
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.9e-234 815.8 513 89.9
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.0e-231 805.8 500 94.4
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.7e-230 802.7 513 91.0
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 6.4e-230 800.8 513 87.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 9.3e-229 797.0 513 92.6
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.7e-228 795.4 513 92.2
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 3.9e-227 791.6 513 90.6
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 3.3e-226 788.5 511 90.6
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 3.3e-226 788.5 511 90.6
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 7.3e-226 787.3 513 90.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 3.1e-224 781.9 513 88.3
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.3e-224 781.2 511 89.4
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.9e-222 775.4 513 90.3
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.2e-220 770.0 512 87.9
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.2e-220 770.0 511 89.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.6e-220 769.6 515 88.0
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.7e-220 768.8 511 87.7
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.7e-220 768.8 512 87.7
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.5e-220 768.5 514 83.5
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.5e-220 768.5 511 89.2
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 6.0e-220 767.7 513 90.6
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 6.0e-220 767.7 511 88.5
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 6.0e-220 767.7 511 84.3
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 6.0e-220 767.7 512 88.1
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.0e-219 765.4 511 87.7
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 3.9e-219 765.0 511 88.6
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 5.1e-219 764.6 511 84.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 5.1e-219 764.6 511 82.8
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 6.7e-219 764.2 511 87.7
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 6.7e-219 764.2 511 87.3
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.1e-218 763.5 515 88.2
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.5e-218 763.1 511 87.3
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.5e-218 763.1 511 83.6
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.9e-218 762.7 513 86.9
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.3e-218 761.9 511 88.5
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.3e-218 761.9 511 86.9
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 3.3e-218 761.9 511 88.8
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.3e-218 761.5 511 88.1
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 4.3e-218 761.5 513 86.9
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 7.4e-218 760.8 504 89.3
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 9.6e-218 760.4 511 83.0
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.6e-217 759.6 515 87.4
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.8e-217 758.8 511 87.7
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 3.7e-217 758.4 520 87.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 3.7e-217 758.4 511 83.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 8.1e-217 757.3 511 87.9
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.1e-216 756.9 511 87.7
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.1e-216 756.9 511 83.2
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.1e-216 756.9 512 87.3
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.1e-216 756.9 511 86.1
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.1e-216 756.9 511 87.7
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.8e-216 756.1 511 86.5
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.8e-216 756.1 513 87.5
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.1e-216 755.4 510 87.8
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 4.0e-216 755.0 511 88.3
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 5.3e-216 754.6 511 86.7
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 6.9e-216 754.2 511 87.7
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.5e-215 753.1 512 87.5
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 7.6e-215 750.7 511 88.3
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 9.9e-215 750.4 511 87.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 9.9e-215 750.4 511 83.0
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 2.2e-214 749.2 517 85.7
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 2.4e-213 745.7 511 85.7
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 3.2e-213 745.3 515 84.5
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.3e-213 743.8 515 85.8
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.1e-212 742.7 511 85.7
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.7e-212 742.3 504 86.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.0e-211 740.3 536 79.1
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.3e-211 739.2 513 87.1
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.3e-211 739.2 515 83.3
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 3.9e-211 738.4 515 83.3
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 6.7e-211 737.6 515 85.4
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 8.7e-211 737.3 515 83.1
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 5.6e-210 734.6 510 80.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 5.6e-210 734.6 511 81.2
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 9.6e-210 733.8 533 74.5
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.3e-209 733.4 504 86.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.1e-209 732.6 511 85.3
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 2.8e-209 732.3 512 85.7
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 2.8e-209 732.3 511 85.1
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.4e-208 729.2 511 86.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 9.0e-208 727.2 511 85.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-207 726.1 504 84.5
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 8.4e-206 720.7 511 79.6
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.4e-206 720.7 511 79.6
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.9e-205 719.5 511 84.1
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 2.1e-204 716.1 507 83.4
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 9.7e-202 707.2 539 75.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.4e-199 698.7 511 80.4
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.7e-199 697.6 511 78.3
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.8e-198 695.3 511 81.6
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.5e-198 694.1 554 77.1
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 5.5e-197 691.4 511 73.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 7.2e-197 691.0 511 74.4
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.1e-196 689.5 532 78.8
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-196 689.5 511 82.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-194 683.7 485 83.3
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 6.9e-192 674.5 511 80.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 3.4e-191 672.2 513 73.1
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 6.5e-190 667.9 523 79.2
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.6e-188 663.3 553 67.1
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.4e-187 660.2 461 88.1
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.8e-185 652.5 484 80.8
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.4e-184 650.2 465 85.8
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.3e-178 629.0 515 77.5
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.1e-176 624.0 428 88.3
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 3.1e-176 622.5 435 84.8
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.5e-173 611.7 513 72.9
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.2e-172 610.5 430 87.4
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 6.8e-155 551.6 414 83.6
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 3.1e-152 542.7 512 66.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 9.2e-136 488.0 269 90.0
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.5e-127 459.5 251 90.8
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.9e-117 427.2 322 78.0
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.3e-117 426.0 308 77.9
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 7.8e-111 405.2 385 60.0
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 7.4e-101 372.1 207 90.8
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.6e-100 370.9 207 90.3
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 2.0e-90 337.4 365 72.3
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.0e-77 294.3 258 76.4
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-71 275.0 528 39.6
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 4.7e-71 273.1 519 47.2
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 3.1e-67 260.4 175 83.4
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.2e-58 231.9 130 90.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.8e-46 189.5 166 57.2
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 9.1e-43 179.1 95 86.3
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 6.6e-41 172.9 318 42.1
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 4.4e-37 160.2 80 93.8
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.5e-34 150.6 298 33.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 5.9e-34 149.8 137 66.4
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.3e-32 144.1 242 41.3
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 4.0e-30 137.1 107 68.2
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 8.9e-30 136.0 77 87.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 5.8e-29 133.3 70 94.3
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 2.4e-27 127.9 69 94.2
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.0e-26 124.8 64 95.3
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.0e-26 124.8 64 95.3
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-23 114.8 56 91.1
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 7.5e-21 106.3 52 90.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 4.1e-19 100.5 56 78.6
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.7e-17 95.1 72 63.9
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.7e-17 95.1 72 63.9
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.9e-16 91.7 46 82.6
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.5e-16 91.3 47 95.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 3.6e-15 87.4 46 78.3
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.2e-13 82.4 134 70.9
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.9e-11 75.1 105 43.8
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.1e-11 73.2 35 85.7
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 2.7e-10 71.2 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 8.6e-09 66.2 62 59.7
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.6e-07 62.0 35 85.7


User provided reference genes

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