Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 2.0e-65 252.3 125 100.0
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 2.2e-64 248.8 125 97.6
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 2.2e-64 248.8 125 97.6
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 2.2e-64 248.8 125 97.6
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 2.2e-64 248.8 125 97.6
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 2.2e-64 248.8 125 97.6
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 6.3e-64 247.3 125 96.8
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.1e-63 246.5 125 96.8
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.4e-63 246.1 125 96.0
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.4e-63 246.1 125 96.0
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.2e-62 243.0 125 96.0
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 2.9e-61 238.4 125 94.4
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 5.0e-61 237.7 125 93.6
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 5.0e-61 237.7 125 93.6
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 92.0
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 92.0
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 90.4
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 90.4
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 91.2
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 1.0e-58 229.9 123 91.9
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 1.4e-58 229.6 125 91.2
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 90.4
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 91.2
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 3.0e-58 228.4 115 96.5
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 3.0e-58 228.4 123 91.1
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 3.9e-58 228.0 125 90.4
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 89.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 124 89.5
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 88.8
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 89.4
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 89.6
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 89.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 89.6
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 90.4
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 88.8
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 88.8
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 89.6
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 88.8
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 88.8
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 123 89.4
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 88.0
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 87.2
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 7.4e-57 223.8 123 88.6
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 9.7e-57 223.4 123 88.6
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.0
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 88.0
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 88.8
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 88.0
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 87.2
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 87.2
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 87.2
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 88.0
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 88.0
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 87.2
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 2.2e-56 222.2 127 89.0
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 88.1
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 88.1
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 3.7e-56 221.5 124 87.1
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 4.8e-56 221.1 121 89.3
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 4.8e-56 221.1 126 88.1
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 6.3e-56 220.7 126 88.9
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 6.3e-56 220.7 128 86.7
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 88.6
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 88.6
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 88.6
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 86.2
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.4e-55 219.5 121 89.3
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 88.6
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 88.6
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 85.6
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 88.4
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 1.8e-55 219.2 128 85.9
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 1.8e-55 219.2 128 85.9
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.8e-55 219.2 128 86.7
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 118 90.7
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 88.0
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 88.0
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 88.0
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 5.3e-55 217.6 122 86.9
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 7.0e-55 217.2 125 85.6
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 7.0e-55 217.2 125 85.6
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 7.0e-55 217.2 117 90.6
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 9.1e-55 216.9 125 87.2
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 2.0e-54 215.7 125 86.4
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 2.0e-54 215.7 125 87.2
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 2.0e-54 215.7 125 86.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 2.0e-54 215.7 129 83.7
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 1.3e-53 213.0 125 85.6
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.7e-53 212.6 128 85.9
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 3.8e-53 211.5 125 85.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.8e-53 211.5 125 84.8
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 6.5e-53 210.7 119 84.9
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 4.2e-52 208.0 116 88.8
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 5.5e-52 207.6 116 88.8
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 7.2e-52 207.2 116 87.9
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 7.2e-52 207.2 122 83.6
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.6e-51 206.1 118 83.9
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 1.8e-50 202.6 118 81.4
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 1.8e-50 202.6 119 81.5
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.8e-50 202.6 122 81.1
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 2.3e-50 202.2 122 81.1
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 2.0e-46 189.1 125 73.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 5.0e-45 184.5 139 69.8
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 8.5e-45 183.7 115 76.5
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 2.5e-44 182.2 106 84.9
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 7.5e-41 170.6 119 68.1
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 2.4e-39 165.6 94 83.0
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.3e-37 159.1 85 89.4
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 6.1e-35 151.0 91 83.5
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 2.0e-33 146.0 109 60.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.0e-29 133.7 113 52.2
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 8.9e-26 120.6 70 77.1
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 8.0e-19 97.4 99 52.5
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 6.0e-14 81.3 40 95.0
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 6.0e-14 81.3 77 55.8
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.9e-07 59.7 31 83.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 3.2e-07 58.9 120 35.0
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 7.1e-07 57.8 89 36.0
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 9.2e-07 57.4 99 32.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 1.2e-06 57.0 81 37.0
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 1.2e-06 57.0 96 33.3
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 1.6e-06 56.6 109 30.3
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 2.1e-06 56.2 64 45.3
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.1e-06 56.2 104 35.6
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.7e-06 55.8 100 35.0
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.7e-06 55.8 100 35.0
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.7e-06 55.8 100 35.0
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 2.7e-06 55.8 89 33.7
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 3.5e-06 55.5 89 38.2
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 4.6e-06 55.1 83 36.1
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 4.6e-06 55.1 62 41.9
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 6.0e-06 54.7 74 35.1
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 6.0e-06 54.7 73 38.4
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 6.0e-06 54.7 84 34.5
SGA_v2.0_scaffold25G10780 Striga asiatica HOM05D000142 ORTHO05D001253 6.0e-06 54.7 78 34.6
TAR636G3268 Trochodendron aralioides HOM05D001413 ORTHO05D001385 6.0e-06 54.7 72 40.3
Cfa023163 Carpinus fangiana HOM05D000604 ORTHO05D004856 7.8e-06 54.3 119 31.1
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 34.3
HanXRQChr10g0299291 Helianthus annuus HOM05D001413 ORTHO05D001385 7.8e-06 54.3 87 34.5
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 7.8e-06 54.3 76 35.5
QL11p020733 Quercus lobata HOM05D003264 ORTHO05D003276 7.8e-06 54.3 104 30.8


User provided reference genes

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