Gene: Solyc01g008360.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g008360.3
  • Transcript Identifier Solyc01g008360.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 2421995-2423547 : positive

Gene Family Information

  • ID HOM05D006044
  • #Genes/#Species 130/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g008360.3.1
  • uniprot A0A3Q7E907
  • gene_id Solyc01g008360

Descriptions

  • Description RNA binding protein (AHRD V3.3 *** B3TLZ0_ELAGV)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G12190

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005684
IBA
GOA DatabaseU2-type spliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR034150 SF3B6, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.1.2.4.6 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B6