Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 9.9e-162 575.1 940 100.0
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 6.0e-135 486.1 359 78.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.0e-134 485.3 950 89.9
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 4.8e-132 476.5 365 76.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 9.3e-128 462.2 361 75.6
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 2.3e-126 457.6 951 89.3
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.9e-125 454.5 947 88.7
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.7e-124 451.4 352 75.6
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.5e-122 444.9 383 69.5
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 6.1e-119 433.0 353 72.2
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.5e-104 385.2 356 62.4
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 9.7e-101 372.5 355 64.8
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.6e-79 302.0 247 65.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 6.1e-79 300.1 238 66.0
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.2e-78 297.0 239 63.2
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.0e-77 295.0 242 65.3
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.0e-77 295.0 240 67.1
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.8e-77 293.5 237 65.0
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 7.5e-77 293.1 237 65.0
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.7e-76 292.0 244 64.8
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.9e-76 291.2 247 59.5
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 3.7e-76 290.8 237 65.0
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.9e-76 290.4 258 63.6
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 4.9e-76 290.4 321 57.0
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.1e-75 289.3 348 54.6
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.4e-75 288.1 235 66.0
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 5.4e-75 287.0 234 66.7
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 5.4e-75 287.0 206 68.4
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.6e-74 285.4 231 67.5
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.6e-74 285.4 240 63.8
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.7e-74 284.6 241 63.5
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.7e-74 284.6 238 64.3
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 7.8e-74 283.1 240 65.0
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 7.8e-74 283.1 240 62.9
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 6.6e-73 280.0 243 63.4
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.1e-72 279.3 202 66.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.5e-72 278.9 241 61.4
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 1.5e-72 278.9 236 61.0
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 4.3e-72 277.3 363 52.6
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 5.6e-72 276.9 245 63.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.3e-72 276.6 196 69.9
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 7.3e-72 276.6 252 62.3
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.6e-71 275.4 203 65.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 4.7e-71 273.9 236 63.6
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 4.7e-71 273.9 244 63.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 4.7e-71 273.9 238 63.4
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 6.2e-71 273.5 245 59.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 6.2e-71 273.5 237 64.6
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.1e-70 272.7 198 66.7
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.4e-70 272.3 201 65.2
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 3.1e-70 271.2 232 61.6
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 6.8e-70 270.0 332 50.3
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 8.9e-70 269.6 232 62.1
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.2e-69 269.2 229 62.4
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 1.5e-69 268.9 239 63.2
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.5e-69 268.9 238 61.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.0e-69 268.5 237 62.9
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.0e-69 268.5 193 66.8
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.4e-69 267.7 193 68.9
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 3.4e-69 267.7 244 58.2
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.5e-69 266.5 236 59.3
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 7.5e-69 266.5 239 63.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 9.8e-69 266.2 193 65.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.3e-68 265.8 194 64.9
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.3e-68 265.8 244 61.5
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.3e-68 265.8 240 58.8
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.3e-68 265.8 244 59.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 2.9e-68 264.6 207 62.3
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 4.9e-68 263.8 248 60.5
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.4e-67 261.5 241 59.8
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.2e-67 261.2 336 47.9
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 5.4e-67 260.4 190 68.9
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 5.4e-67 260.4 240 59.6
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.5e-66 257.7 240 59.2
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.5e-66 257.7 240 59.2
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 4.6e-66 257.3 188 64.9
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-65 255.0 241 57.3
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-65 255.0 347 51.9
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.9e-65 254.2 236 58.9
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 6.6e-65 253.4 238 58.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.9e-64 251.9 243 58.8
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 5.6e-64 250.4 241 56.0
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.2e-63 249.2 241 57.3
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.6e-63 248.8 228 61.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.8e-62 245.4 240 58.3
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 3.1e-62 244.6 184 63.6
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.9e-60 238.0 196 60.2
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.2e-58 232.6 235 57.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.3e-57 228.4 240 50.0
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 6.6e-57 226.9 194 59.3
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.5e-56 225.7 199 54.3
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.4e-54 219.2 200 53.5
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.8e-53 213.8 205 56.1
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 2.2e-52 211.8 152 68.4
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 5.4e-51 207.2 188 57.4
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.9e-48 198.7 145 68.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.6e-47 194.5 133 70.7
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 4.7e-47 194.1 287 49.1
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.1e-46 193.0 167 56.9
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 3.4e-45 188.0 154 59.1
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.8e-39 168.3 91 87.9
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 6.2e-39 167.2 214 40.7
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 5.8e-37 160.6 137 59.1
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 1.1e-35 156.4 186 44.6
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.9e-35 155.6 130 63.1
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.4e-35 154.1 194 40.2
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.6e-31 142.5 92 75.0
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 2.0e-29 135.6 198 43.4
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 5.8e-29 134.0 198 37.9
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.3e-28 132.9 92 69.6
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.9e-28 131.7 80 73.8
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.9e-28 131.7 93 68.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.1e-27 129.8 185 40.0
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.5e-27 128.6 75 76.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 4.2e-27 127.9 185 40.0
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 5.5e-27 127.5 77 72.7
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.5e-27 127.5 92 63.0
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 9.3e-27 126.7 92 62.0
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.2e-26 126.3 108 55.6
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-26 125.9 77 72.7
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.0e-25 123.2 75 73.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.0e-25 121.7 201 32.3
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 3.9e-25 121.3 90 63.3
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 7.4e-24 117.1 76 69.7
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.8e-23 114.4 74 70.3
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.4e-22 112.1 120 53.3
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 3.1e-22 111.7 91 76.9
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.3e-20 106.3 92 63.0
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.9e-20 105.1 76 60.5
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.2e-19 101.7 78 64.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.8e-17 95.9 72 65.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 3.3e-16 91.7 59 71.2
C02p02080 Brassica napus HOM05D000001 ORTHO05D002611 1.7e-12 79.3 51 70.6
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 8.5e-12 77.0 46 76.1
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 7.2e-11 73.9 44 79.5
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 7.2e-11 73.9 44 79.5
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.6e-10 71.6 43 74.4
BcaC02g08511 Brassica carinata HOM05D005462 ORTHO05D006718 1.0e-09 70.1 68 58.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.3e-08 65.1 152 27.6
Eucgr.F02224 Eucalyptus grandis HOM05D000285 ORTHO05D000241 6.3e-07 60.8 74 40.5
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 8.2e-07 60.5 45 64.4
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.4e-06 59.7 80 35.0
BraA02t04825Z Brassica rapa HOM05D000001 ORTHO05D002611 1.4e-06 59.7 46 67.4
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 1.8e-06 59.3 81 35.8
AT4G26650 Arabidopsis thaliana HOM05D000285 ORTHO05D000241 2.4e-06 58.9 106 32.1
Carub.0007s1422 Capsella rubella HOM05D000285 ORTHO05D000241 2.4e-06 58.9 106 33.0
THA.LOC104813442 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 2.4e-06 58.9 74 37.8
Duzib264G0472 Durio zibethinus HOM05D000285 ORTHO05D000241 3.1e-06 58.5 99 39.4
Lalb_Chr15g0088061 Lupinus albus HOM05D000285 ORTHO05D000241 3.1e-06 58.5 83 33.7
MBI06_g02336_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 3.1e-06 58.5 88 39.8
Hund23136 Selenicereus undatus HOM05D000285 ORTHO05D000241 3.1e-06 58.5 81 33.3
Haze_14774 Corylus avellana HOM05D000142 ORTHO05D001253 5.3e-06 57.8 81 39.5
Migut.M01417 Erythranthe guttata HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 37.8
HanXRQChr01g0005101 Helianthus annuus HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
Lalb_Chr04g0248031 Lupinus albus HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
Zm00001eb116460 Zea mays HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
Zm00001eb302580 Zea mays HOM05D000285 ORTHO05D000241 5.3e-06 57.8 74 36.5
AT5G47620 Arabidopsis thaliana HOM05D000285 ORTHO05D000241 6.9e-06 57.4 75 36.0
CSS0014702 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008707 6.9e-06 57.4 100 35.0
Carub.0008s0017 Capsella rubella HOM05D000285 ORTHO05D000241 6.9e-06 57.4 75 36.0
Cc09_g00660 Coffea canephora HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 33.8
Thhalv10000891m.g Eutrema salsugineum HOM05D000285 ORTHO05D000241 6.9e-06 57.4 75 36.0
PSO210G6644 Papaver somniferum HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 35.1
PSO302G0304 Papaver somniferum HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 35.1
THA.LOC104817697 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 6.9e-06 57.4 74 36.5
Aa31LG5G12290 Aethionema arabicum HOM05D000285 ORTHO05D001781 9.1e-06 57.0 113 32.7
Migut.G00576 Erythranthe guttata HOM05D000142 ORTHO05D008707 9.1e-06 57.0 102 37.3
Sp6g17440 Schrenkiella parvula HOM05D000285 ORTHO05D000241 9.1e-06 57.0 74 35.1
Sp7g24620 Schrenkiella parvula HOM05D000285 ORTHO05D000241 9.1e-06 57.0 106 32.1
THA.LOC104812800 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 9.1e-06 57.0 75 37.3
Zm00001eb302640 Zea mays HOM05D000285 ORTHO05D000241 9.1e-06 57.0 74 36.5


User provided reference genes

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