Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.2e-247 858.6 463 100.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.0e-223 780.0 461 88.7
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.8e-223 778.1 460 90.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.0e-223 777.7 460 88.9
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.9e-222 775.8 460 88.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.3e-220 768.8 460 89.8
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.9e-220 768.1 460 89.8
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.4e-188 663.3 462 73.8
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 6.8e-188 661.0 458 77.3
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.3e-186 656.8 461 73.5
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.4e-185 653.3 456 74.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 4.5e-184 648.3 462 72.3
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 8.5e-183 644.0 455 72.3
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-182 643.3 462 72.1
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.9e-182 642.9 462 72.1
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 7.2e-182 641.0 450 72.0
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.2e-182 641.0 462 71.6
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.1e-181 637.9 460 70.4
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.3e-180 636.0 460 71.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 4.0e-180 635.2 457 70.9
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 5.2e-180 634.8 464 71.3
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 6.8e-180 634.4 462 73.6
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 2.4e-177 625.9 460 70.4
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 7.0e-177 624.4 456 74.1
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 9.2e-177 624.0 462 71.0
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.2e-176 623.6 459 70.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-176 622.9 462 70.8
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.5e-176 622.1 473 68.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.5e-176 622.1 473 68.9
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 3.5e-176 622.1 460 71.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 7.7e-176 620.9 464 71.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.9e-174 616.3 460 69.6
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.8e-173 612.5 458 67.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.6e-173 612.1 461 68.8
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.6e-173 612.1 455 69.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.0e-172 610.5 462 69.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.8e-172 609.8 462 68.8
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 4.0e-172 608.6 464 70.3
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 6.8e-172 607.8 456 71.1
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 8.9e-172 607.4 458 70.5
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.7e-170 603.2 455 69.2
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 2.9e-170 602.4 448 69.2
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-168 596.3 478 66.5
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 4.6e-168 595.1 460 72.4
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 4.6e-168 595.1 463 73.2
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.3e-167 593.6 464 66.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.9e-167 592.0 454 70.0
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 4.3e-166 588.6 456 68.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 5.6e-166 588.2 461 66.2
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 7.3e-166 587.8 454 68.1
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-165 587.0 437 70.3
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.1e-165 586.3 456 67.8
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 2.1e-165 586.3 455 67.9
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.8e-165 585.9 440 70.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 4.7e-165 585.1 459 66.9
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.2e-165 584.7 455 67.3
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.8e-164 583.2 455 67.7
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 5.2e-164 581.6 455 67.3
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 8.9e-164 580.9 458 67.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 8.9e-164 580.9 451 68.3
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 3.4e-163 578.9 463 65.2
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.3e-162 577.0 458 66.2
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.3e-162 577.0 467 65.7
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.7e-162 575.5 461 65.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.4e-162 574.7 454 68.1
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 8.3e-162 574.3 457 66.3
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.9e-161 573.2 456 68.6
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.7e-160 569.3 456 68.4
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 3.5e-160 568.9 459 65.8
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 4.6e-160 568.5 459 66.4
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 5.0e-159 565.1 457 66.3
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.9e-158 563.1 457 66.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.9e-154 549.3 453 67.5
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.7e-154 548.9 459 64.3
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.4e-153 547.0 459 66.9
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.5e-152 542.3 462 62.8
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.0e-151 540.8 455 62.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.3e-151 540.4 511 60.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.3e-151 539.7 460 64.1
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.0e-151 539.3 418 67.5
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 4.7e-149 531.9 458 62.7
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.3e-148 529.6 542 56.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.0e-147 526.6 459 61.4
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.3e-146 523.9 456 60.3
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.7e-144 516.2 477 60.4
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.3e-143 513.8 417 66.9
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.6e-142 508.4 472 60.0
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 3.1e-140 502.7 470 60.2
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.0e-139 500.0 445 61.3
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.6e-136 490.3 474 56.3
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.6e-136 488.8 460 60.0
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.0e-136 488.4 446 59.6
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 6.6e-135 485.0 424 63.2
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 8.7e-135 484.6 453 56.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.1e-133 479.9 446 58.3
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 6.2e-133 478.4 371 69.0
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 9.9e-131 471.1 272 84.9
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-130 470.3 326 83.1
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.5e-126 457.2 473 54.3
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.6e-123 446.4 268 81.7
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.9e-121 440.3 366 62.3
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.1e-118 431.0 253 83.4
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 6.2e-117 425.2 253 82.2
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.6e-115 419.9 438 52.5
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.4e-113 414.1 337 63.5
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.1e-110 404.4 443 49.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.3e-109 401.0 419 52.0
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.1e-105 387.9 230 83.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 3.6e-104 382.9 445 50.6
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 6.1e-96 355.5 428 49.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 9.7e-94 348.2 384 52.3
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 8.2e-93 345.1 490 43.5
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.4e-92 344.4 330 62.7
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 5.5e-89 332.4 293 64.5
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.6e-78 297.0 335 56.1
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.0e-75 287.3 265 58.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.5e-73 280.4 299 51.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.0e-71 275.0 300 53.7
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.2e-66 257.3 247 59.1
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.7e-61 240.0 210 62.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 2.5e-57 227.3 226 58.4
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.2e-54 218.4 254 44.9
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.7e-53 214.5 222 54.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 8.3e-53 212.2 411 37.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 7.0e-52 209.1 258 46.1
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.1e-48 197.6 138 64.5
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 5.2e-47 193.0 255 42.4
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.9e-45 186.4 106 88.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 3.0e-42 177.2 91 92.3
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.5e-41 174.1 86 93.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 4.3e-41 173.3 111 79.3
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.4e-39 168.3 160 55.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 5.6e-33 146.4 77 87.0
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 9.9e-30 135.6 87 69.0
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.8e-29 133.7 86 75.6
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.7e-26 124.8 260 31.5
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.6e-22 110.9 95 58.9
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-20 105.1 187 39.6
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 5.4e-20 103.2 67 73.1
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 7.8e-19 99.4 69 75.4
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.5e-17 95.1 82 64.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-15 89.0 187 35.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 4.5e-14 83.6 81 59.3
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 4.5e-14 83.6 51 74.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.8e-13 80.5 59 66.1
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-06 58.5 93 41.9


User provided reference genes

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