Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 0.0e+00 1243.8 629 100.0
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 0.0e+00 1104.0 629 88.7
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.0e-307 1058.5 629 85.2
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 4.1e-305 1050.8 629 84.4
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.2e-293 1012.7 629 78.2
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 6.0e-288 993.8 637 76.8
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 2.5e-286 988.4 629 75.8
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.5e-286 986.5 590 84.4
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 4.7e-285 984.2 662 72.7
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 3.1e-284 981.5 629 76.5
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 5.2e-284 980.7 629 77.6
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 1.6e-280 969.1 629 76.6
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.9e-278 962.2 629 74.4
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 1.9e-278 962.2 629 74.2
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 1.9e-273 945.7 629 74.1
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 4.2e-273 944.5 629 73.1
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.1e-272 942.2 629 73.6
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 1.3e-269 932.9 629 73.3
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 1.8e-268 929.1 629 73.0
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 9.0e-268 926.8 628 73.1
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.6e-267 925.2 629 72.0
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 4.4e-267 924.5 629 71.9
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 6.4e-266 920.6 629 71.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 8.4e-266 920.2 629 71.9
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 1.4e-265 919.5 605 74.2
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.6e-264 916.0 646 75.7
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 4.6e-264 914.4 630 72.1
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.3e-263 912.9 630 71.9
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.7e-263 912.5 632 70.6
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.9e-263 911.4 630 72.1
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 6.6e-263 910.6 629 71.2
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.7e-263 910.2 629 71.2
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 8.7e-263 910.2 629 70.3
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 1.9e-262 909.1 630 70.3
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 5.6e-262 907.5 629 70.3
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 3.6e-261 904.8 631 70.7
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 4.8e-261 904.4 610 72.1
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 6.9e-260 900.6 720 63.6
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 7.6e-259 897.1 629 70.3
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.2e-258 895.6 629 70.4
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 2.9e-258 895.2 636 71.4
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 4.9e-258 894.4 628 68.3
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.4e-257 892.9 628 68.5
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 3.0e-255 885.2 631 69.4
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.8e-252 875.9 628 69.3
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.2e-251 873.2 629 67.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.3e-250 869.8 628 67.7
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 6.5e-250 867.5 629 67.4
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 2.5e-249 865.5 628 68.8
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 4.2e-249 864.8 630 69.5
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 4.2e-249 864.8 630 67.5
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 5.5e-249 864.4 628 67.5
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 7.1e-249 864.0 630 67.0
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 1.0e-247 860.1 630 67.3
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 6.7e-247 857.4 629 66.8
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 2.5e-246 855.5 629 66.3
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 3.3e-246 855.1 629 66.5
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.8e-244 849.4 629 67.1
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 2.4e-244 849.0 629 65.8
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 6.9e-244 847.4 627 67.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.0e-242 843.6 640 67.0
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 6.5e-242 840.9 630 65.9
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.5e-242 840.5 629 67.7
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.7e-240 835.5 641 66.5
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.1e-238 830.1 631 63.9
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.9e-233 812.8 644 64.9
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.8e-231 806.2 632 63.9
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 6.7e-231 804.3 629 63.8
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 4.4e-230 801.6 632 63.3
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.2e-227 793.5 596 67.8
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 4.5e-227 791.6 628 64.6
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.1e-225 786.9 494 76.7
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 5.5e-225 784.6 641 64.4
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.1e-220 768.8 609 65.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.2e-217 758.8 740 55.9
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 6.7e-215 751.1 629 63.1
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 2.4e-212 742.7 629 61.7
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 5.0e-194 681.8 592 60.0
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 3.4e-190 669.1 642 57.0
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 2.2e-189 666.4 630 58.4
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 4.9e-189 665.2 656 56.9
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 3.9e-178 629.0 622 51.4
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 2.1e-176 623.2 435 70.6
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.2e-160 570.9 439 65.8
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.1e-159 566.2 566 50.7
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.1e-156 557.8 566 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.1e-148 531.2 638 46.9
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 3.8e-141 506.1 543 52.3
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 9.3e-140 501.5 441 60.1
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 2.7e-139 500.0 625 44.3
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 1.1e-137 494.6 627 43.4
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 1.3e-136 491.1 629 45.2
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 7.9e-131 471.9 309 75.7
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 4.6e-123 446.0 271 79.0
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 8.7e-122 441.8 407 57.2
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 3.8e-117 426.4 285 70.5
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 2.7e-115 420.2 292 72.9
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 6.9e-111 405.6 296 68.6
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 9.4e-92 342.0 244 68.9
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 5.7e-89 332.8 272 61.8
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 1.9e-84 317.8 228 71.5
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 7.2e-84 315.8 245 65.7
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 4.0e-82 310.1 232 65.5
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 3.5e-70 270.4 248 55.2
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.5e-62 243.8 158 70.3
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 7.3e-60 236.1 709 28.9
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.6e-54 216.9 184 63.0
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.6e-54 216.9 171 65.5
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 4.0e-50 203.8 164 63.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.8e-48 197.2 189 56.6
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 4.9e-48 196.8 620 28.2
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.7e-46 191.0 135 72.6
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 1.7e-40 171.8 131 66.4
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 4.0e-34 150.6 118 60.2
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.9e-31 141.7 92 69.6
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.2e-31 141.0 106 67.9
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.6e-22 112.1 73 67.1
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 7.4e-20 103.2 128 43.0
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.1e-18 97.8 88 59.1
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 7.6e-17 93.2 66 65.2
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.1e-15 89.4 57 73.7
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.9e-15 88.6 78 57.7
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 7.1e-15 86.7 62 72.6
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.6e-14 85.5 65 69.2
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 3.5e-14 84.3 302 29.5
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 7.4e-12 76.6 62 58.1
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 9.0e-10 69.7 47 68.1
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 5.9e-09 67.0 74 52.7


User provided reference genes

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