Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G125600 Theobroma cacao HOM05D000688 ORTHO05D409510 2.1e-61 238.8 119 100.0
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 1.3e-18 96.7 60 75.0
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.7e-18 96.3 70 71.4
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 2.2e-18 95.9 60 73.3
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 3.8e-18 95.1 59 74.6
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 3.8e-18 95.1 60 75.0
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 5.0e-18 94.7 59 72.9
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 6.5e-18 94.4 68 69.1
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 3.2e-17 92.0 59 72.9
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 4.2e-17 91.7 60 71.7
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 5.5e-17 91.3 59 71.2
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 5.5e-17 91.3 61 72.1
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 5.5e-17 91.3 60 71.7
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 5.5e-17 91.3 59 72.9
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 7.2e-17 90.9 59 69.5
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 7.2e-17 90.9 59 71.2
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 7.2e-17 90.9 60 70.0
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 9.4e-17 90.5 68 64.7
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 1.6e-16 89.7 69 63.8
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 1.6e-16 89.7 68 66.2
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 1.6e-16 89.7 70 62.9
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.1e-16 89.4 59 69.5
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.1e-16 89.4 59 69.5
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 2.1e-16 89.4 61 72.1
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.1e-16 89.4 68 67.6
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.1e-16 89.4 68 67.6
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 2.7e-16 89.0 68 64.7
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 2.7e-16 89.0 68 66.2
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 3.6e-16 88.6 61 70.5
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 3.6e-16 88.6 61 70.5
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 3.6e-16 88.6 59 69.5
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 4.6e-16 88.2 59 69.5
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 4.6e-16 88.2 68 63.2
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 6.1e-16 87.8 71 63.4
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 6.1e-16 87.8 71 63.4
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 7.9e-16 87.4 68 64.7
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 7.9e-16 87.4 71 62.0
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 1.4e-15 86.7 64 59.4
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.4e-15 86.7 61 68.9
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 1.8e-15 86.3 62 64.5
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 1.8e-15 86.3 69 63.8
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 2.3e-15 85.9 68 63.2
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 2.3e-15 85.9 60 66.7
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 2.3e-15 85.9 68 66.2
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 2.3e-15 85.9 59 66.1
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 3.0e-15 85.5 60 66.7
Peaxi162Scf00053g00812 Petunia axillaris HOM05D000688 ORTHO05D004737 3.0e-15 85.5 68 63.2
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 3.0e-15 85.5 68 63.2
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 3.9e-15 85.1 58 69.0
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 3.9e-15 85.1 68 64.7
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 5.1e-15 84.7 60 65.0
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 6.7e-15 84.3 69 60.9
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 6.7e-15 84.3 68 63.2
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 6.7e-15 84.3 62 62.9
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 6.7e-15 84.3 62 62.9
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 8.8e-15 84.0 68 64.7
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 1.1e-14 83.6 60 65.0
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.1e-14 83.6 60 65.0
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.1e-14 83.6 60 65.0
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.1e-14 83.6 60 65.0
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.1e-14 83.6 60 65.0
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 1.5e-14 83.2 72 61.1
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.5e-14 83.2 58 65.5
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 1.5e-14 83.2 68 61.8
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.5e-14 83.2 68 60.3
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 1.5e-14 83.2 68 60.3
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 2.5e-14 82.4 62 61.3
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 2.5e-14 82.4 68 60.3
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 4.3e-14 81.6 68 60.3
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 4.3e-14 81.6 68 61.8
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 4.3e-14 81.6 58 67.2
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 4.3e-14 81.6 68 58.8
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 5.7e-14 81.3 58 67.2
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 7.4e-14 80.9 64 60.9
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 7.4e-14 80.9 64 60.9
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 7.4e-14 80.9 60 63.3
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 7.4e-14 80.9 68 60.3
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 7.4e-14 80.9 72 61.1
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 9.7e-14 80.5 58 65.5
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 9.7e-14 80.5 68 58.8
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 9.7e-14 80.5 68 60.3
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 9.7e-14 80.5 62 59.7
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 1.3e-13 80.1 64 59.4
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 1.3e-13 80.1 64 59.4
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 1.3e-13 80.1 68 60.3
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.3e-13 80.1 72 59.7
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 1.3e-13 80.1 72 59.7
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 1.7e-13 79.7 68 60.3
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 2.2e-13 79.3 68 60.3
CDE08G0441 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 2.8e-13 79.0 68 58.8
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 2.8e-13 79.0 68 55.9
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 2.8e-13 79.0 68 60.3
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 2.8e-13 79.0 60 60.0
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 3.7e-13 78.6 62 61.3
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.7e-13 78.6 58 62.1
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.7e-13 78.6 58 62.1
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 3.7e-13 78.6 58 62.1
RcHm_v2.0_Chr5g0042241 Rosa chinensis HOM05D000688 ORTHO05D004737 4.8e-13 78.2 58 63.8
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 6.3e-13 77.8 68 60.3
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 8.2e-13 77.4 62 59.7
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 8.2e-13 77.4 62 59.7
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 8.2e-13 77.4 62 59.7
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 8.2e-13 77.4 68 60.3
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.1e-12 77.0 62 59.7
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 1.1e-12 77.0 58 62.1
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 1.4e-12 76.6 59 62.7
HPP92_002312 Vanilla planifolia HOM05D000688 ORTHO05D004737 1.4e-12 76.6 61 60.7
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.8e-12 76.3 68 55.9
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 1.8e-12 76.3 60 58.3
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 1.8e-12 76.3 68 55.9
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 2.4e-12 75.9 62 58.1
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 2.4e-12 75.9 68 58.8
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 2.4e-12 75.9 62 58.1
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 2.4e-12 75.9 68 54.4
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 3.1e-12 75.5 58 58.6
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 4.1e-12 75.1 67 59.7
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 4.1e-12 75.1 68 55.9
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 5.3e-12 74.7 67 58.2
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 5.3e-12 74.7 68 57.4
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 5.3e-12 74.7 62 58.1
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 9.1e-12 73.9 68 54.4
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 1.2e-11 73.6 60 58.3
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 2.6e-11 72.4 71 54.9
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 2.6e-11 72.4 68 52.9
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 2.6e-11 72.4 68 52.9
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 1.0e-10 70.5 71 53.5
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 1.3e-10 70.1 68 57.4
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 3.2e-09 65.5 74 52.7
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 4.2e-09 65.1 77 45.5
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 5.5e-09 64.7 64 51.6
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 2.6e-06 55.8 72 44.4


User provided reference genes

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