Gene: Glyma.06G061600
General Information
Structural Information
- Species Glycine max
- Gene Identifier Glyma.06G061600
- Transcript Identifier Glyma.06G061600.1
- Gene Type Coding gene
- Location Gm06 : 4614117-4619304 : negative
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D004737
- #Genes/#Species 172/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Glyma.06G061600.Wm82.a4.v1
- pacid 41151628
- synonym Glyma06g06480
Descriptions
- Description K16252 - DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] (NRPD2, NRPE2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050776 | ISO | PLAZA Integrative Orthology | regulation of immune response | AT3G23780 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT3G23780 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT3G23780 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT3G23780 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT3G23780 |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT3G23780 |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT3G18090 |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G23780 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G23780 |
| GO:0030880 | ISO | PLAZA Integrative Orthology | RNA polymerase complex | AT3G23780 |
| GO:0000792 | ISO | PLAZA Integrative Orthology | heterochromatin | AT3G23780 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT3G23780 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G23780 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| IPR007641 | RNA polymerase Rpb2, domain 7 |