Gene: Zm00001eb068960
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb068960
- Transcript Identifier Zm00001eb068960_T001
- Gene Type Coding gene
- Location 2 : 6554158-6564342 : negative
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D004737
- #Genes/#Species 172/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Zm00001eb068960_T001
- pid Zm00001eb068960_P001
- uniprot D2WKH8
- uniprot A0A1D6DWW1
- uniprot A0A1D6DWW2
- uniprot Q07DU9
- uniprot A0A3L6G7I0
- uniprot D2WKI1
- uniprot A0A1D6DWU4
- uniprot A0A1D6DWV5
- uniprot A0A1D6DWU1
- uniprot D2WKI0
- uniprot A0A1D6DWV9
- uniprot A0A1D6DWV6
- uniprot A0A1D6DWW7
- refseq NP_001177299.1
- refseq XM_008668756.1
- refseq XP_008666978.1
- refseq NM_001190370.1
- V4_identifier Zm00001d002125
Descriptions
- Description Zm00001e006792
- Description DNA-directed RNA polymerase subunit beta
- Description nuclear RNA polymerase D2/E2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050776 | ISO | PLAZA Integrative Orthology | regulation of immune response | AT3G23780 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT3G23780 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT3G23780 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT3G23780 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT3G23780 |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT3G23780 |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT3G18090 |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032549 | IEA | GOA Database | ribonucleoside binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G23780 |
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030880 | ISO | PLAZA Integrative Orthology | RNA polymerase complex | AT3G23780 |
| GO:0000792 | ISO | PLAZA Integrative Orthology | heterochromatin | AT3G23780 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G23780 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT3G23780 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G23780 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005665 | IBA | GOA Database | RNA polymerase II, core complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| IPR014724 | RNA polymerase Rpb2, OB-fold |