Gene: SGA_v2.0_scaffold4G02180

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold4G02180
  • Transcript Identifier SGA_v2.0_scaffold4T02180
  • Gene Type Coding gene
  • Location scaffold4 : 1972875-1988213 : positive

Gene Family Information

  • ID HOM05D000688
  • #Genes/#Species 832/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product DNA-directed RNA polymerase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050776
ISO
PLAZA Integrative Orthologyregulation of immune response AT3G23780
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT3G23780
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT3G23780
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT3G23780
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT3G23780
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT3G23780
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT3G18090
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G23780
GO:0003677
IEA
InterProDNA binding
GO:0032549
IEA
InterProribonucleoside binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G23780
GO:0030880
ISO
PLAZA Integrative OrthologyRNA polymerase complex AT3G23780
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin AT3G23780
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT3G23780
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT3G23780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR025558 Domain of unknown function DUF4283
IPR037034 RNA polymerase Rpb2, domain 2 superfamily
IPR026960 Reverse transcriptase zinc-binding domain
IPR001841 Zinc finger, RING-type
IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR007644 RNA polymerase, beta subunit, protrusion
IPR015712 DNA-directed RNA polymerase, subunit 2
IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR007646 RNA polymerase Rpb2, domain 4
IPR007645 RNA polymerase Rpb2, domain 3
IPR007642 RNA polymerase Rpb2, domain 2
IPR007641 RNA polymerase Rpb2, domain 7
IPR014724 RNA polymerase Rpb2, OB-fold
Mapman id Description
11.1.2.2 Phytohormone action.abscisic acid.perception and signalling.signal transducer (AIP2)
15.1.4.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 2
15.1.5.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 2