Gene: Lj7C733G5

General Information

Structural Information

  • Species Lonicera japonica
  • Gene Identifier Lj7C733G5
  • Transcript Identifier Lj7C733G5.1
  • Gene Type Coding gene
  • Location GWHAAZE00000007 : 73324690-73345781 : negative

Gene Family Information

  • ID HOM05D000688
  • #Genes/#Species 832/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Lj7C733G5.1
  • Accession GWHGAAZE026094
  • Accession GWHTAAZE026128

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050776
ISO
PLAZA Integrative Orthologyregulation of immune response AT3G23780
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT3G23780
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT3G23780
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT3G23780
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT3G23780
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT3G23780
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT3G18090
GO:0046417
IEA
InterProchorismate metabolic process
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0009073
IEA
InterProaromatic amino acid family biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G23780
GO:0004106
IEA
InterProchorismate mutase activity
GO:0003677
IEA
InterProDNA binding
GO:0032549
IEA
InterProribonucleoside binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT3G23780
GO:0030880
ISO
PLAZA Integrative OrthologyRNA polymerase complex AT3G23780
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin AT3G23780
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G23780
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT3G23780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008238 Chorismate mutase, AroQ class, eukaryotic type
IPR015712 DNA-directed RNA polymerase, subunit 2
IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR007645 RNA polymerase Rpb2, domain 3
IPR007644 RNA polymerase, beta subunit, protrusion
IPR007641 RNA polymerase Rpb2, domain 7
IPR007647 RNA polymerase Rpb2, domain 5
IPR037034 RNA polymerase Rpb2, domain 2 superfamily
IPR036263 Chorismate mutase type II superfamily
IPR007642 RNA polymerase Rpb2, domain 2
IPR014724 RNA polymerase Rpb2, OB-fold
IPR037039 Chorismate mutase, AroQ class superfamily, eukaryotic
IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR007646 RNA polymerase Rpb2, domain 4
Mapman id Description
15.1.4.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 2
15.1.5.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 2
4.1.5.2.1 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase