Gene: Cc01_g06880
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc01_g06880
- Transcript Identifier Cc01_g06880.1
- Gene Type Coding gene
- Location chr1 : 24215568-24222564 : positive
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D004737
- #Genes/#Species 172/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB Q1L6V6
- UniProtKB Q9LK40
- UniProtKB Q9LV32
- UniProtKB P38420
- UniProtKB B9RNV9
- UniProtKB F6H335
- id GSCOCG00030092001
Descriptions
- Description DNA-directed RNA polymerase D subunit 2a
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050776 | ISO | PLAZA Integrative Orthology | regulation of immune response | AT3G23780 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT3G23780 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT3G23780 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT3G23780 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT3G23780 |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT3G23780 |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT3G18090 |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G23780 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G23780 |
| GO:0030880 | ISO | PLAZA Integrative Orthology | RNA polymerase complex | AT3G23780 |
| GO:0000792 | ISO | PLAZA Integrative Orthology | heterochromatin | AT3G23780 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT3G23780 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G23780 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR007642 | RNA polymerase Rpb2, domain 2 |