Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.5e-161 572.8 278 100.0
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-134 483.4 253 92.5
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 1.3e-122 443.4 253 84.2
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 6.6e-122 441.0 253 83.4
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 8.6e-122 440.7 253 82.6
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 1.1e-121 440.3 253 82.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.1e-121 440.3 253 83.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.1e-121 440.3 253 82.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 1.5e-121 439.9 253 83.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 1.5e-121 439.9 253 83.0
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.5e-121 439.1 253 83.0
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 3.3e-121 438.7 253 81.4
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 3.3e-121 438.7 253 83.4
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.3e-121 438.3 253 82.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 7.3e-121 437.6 253 82.6
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 9.5e-121 437.2 255 82.4
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.2e-120 436.8 253 82.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.6e-120 436.4 253 81.8
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 1.6e-120 436.4 253 83.0
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 1.6e-120 436.4 275 76.4
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 3.6e-120 435.3 253 81.8
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.6e-120 435.3 253 82.2
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 6.2e-120 434.5 253 81.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.1e-119 433.7 253 83.4
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.1e-119 433.7 252 81.0
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 1.4e-119 433.3 253 81.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.8e-119 433.0 253 81.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.3e-119 432.6 254 83.1
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 3.1e-119 432.2 254 82.7
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 4.0e-119 431.8 252 81.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.0e-119 431.8 253 81.4
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 6.8e-119 431.0 252 80.6
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 6.8e-119 431.0 253 81.0
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.2e-118 430.3 254 81.9
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-118 429.9 275 75.6
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 1.5e-118 429.9 253 79.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.6e-118 429.1 253 80.6
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 2.6e-118 429.1 253 80.2
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 2.6e-118 429.1 254 81.1
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 3.4e-118 428.7 253 81.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 3.4e-118 428.7 252 80.2
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 3.4e-118 428.7 253 79.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 7.5e-118 427.6 253 81.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 9.9e-118 427.2 252 81.7
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.7e-117 426.4 253 81.0
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 1.7e-117 426.4 252 79.0
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 2.2e-117 426.0 252 79.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 2.2e-117 426.0 253 79.1
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 2.9e-117 425.6 253 78.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.9e-117 425.6 252 79.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 3.7e-117 425.2 253 80.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 4.9e-117 424.9 253 80.6
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 4.9e-117 424.9 252 79.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 6.4e-117 424.5 253 80.2
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 6.4e-117 424.5 252 80.2
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 8.3e-117 424.1 253 79.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 8.3e-117 424.1 253 81.4
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.1e-116 423.7 261 76.6
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 1.9e-116 422.9 253 79.4
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.9e-116 422.9 252 79.8
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 4.1e-116 421.8 252 78.2
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 4.1e-116 421.8 252 78.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 5.4e-116 421.4 253 79.1
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.2e-115 420.2 253 79.8
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.1e-115 419.5 252 78.2
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 2.7e-115 419.1 252 78.6
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 4.6e-115 418.3 252 78.6
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 4.6e-115 418.3 252 79.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.6e-115 418.3 252 79.0
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-114 416.8 252 78.2
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 2.3e-114 416.0 252 77.8
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 2.3e-114 416.0 253 77.5
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 3.0e-114 415.6 254 79.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 3.9e-114 415.2 252 79.8
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 6.6e-114 414.5 254 79.5
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 1.9e-113 412.9 252 77.8
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 7.3e-113 411.0 253 76.3
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 1.2e-112 410.2 254 78.7
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 1.6e-112 409.8 254 76.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 2.1e-112 409.5 253 77.9
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 2.1e-112 409.5 253 77.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 2.1e-112 409.5 253 77.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 2.8e-112 409.1 251 78.5
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 3.6e-112 408.7 253 77.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 3.6e-112 408.7 253 75.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 4.7e-112 408.3 253 76.7
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 4.7e-112 408.3 253 76.7
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 6.2e-112 407.9 253 77.5
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 8.1e-112 407.5 253 77.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 8.1e-112 407.5 253 76.7
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 1.1e-111 407.1 253 79.1
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 1.4e-111 406.8 253 76.7
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.8e-111 406.4 253 77.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 3.1e-111 405.6 253 76.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 3.1e-111 405.6 253 76.7
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 4.0e-111 405.2 253 77.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 5.2e-111 404.8 253 76.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.2e-111 404.8 253 76.7
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 1.5e-110 403.3 253 76.3
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 2.0e-110 402.9 253 76.7
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 9.9e-110 400.6 253 74.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 3.8e-109 398.7 253 77.9
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 4.9e-109 398.3 254 76.8
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 6.4e-109 397.9 253 74.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.4e-108 394.8 308 66.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.2e-107 393.7 253 73.9
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 1.2e-107 393.7 253 73.9
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 2.1e-107 392.9 258 69.4
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 7.8e-107 391.0 228 81.1
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 3.0e-106 389.0 251 74.1
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.6e-105 384.8 253 74.7
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.6e-105 384.8 253 74.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.3e-105 384.4 252 72.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 9.6e-105 384.0 253 72.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 2.1e-104 382.9 253 73.9
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 4.0e-103 378.6 256 72.3
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 2.0e-102 376.3 252 71.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 3.4e-102 375.6 261 70.5
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 7.6e-94 347.8 266 61.7
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 1.3e-90 337.0 253 64.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 5.8e-86 321.6 254 62.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-84 317.4 209 72.2
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.7e-83 312.8 278 57.9
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 5.1e-82 308.5 180 83.9
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.1e-81 307.4 270 57.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 9.0e-79 297.7 253 59.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.2e-77 293.1 267 54.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.8e-74 283.5 260 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 1.3e-72 277.3 276 50.7
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-55 221.1 148 72.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 5.0e-45 185.7 269 39.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.0e-38 163.7 254 36.6
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-37 161.0 227 42.7
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 1.8e-34 150.6 86 84.9
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 8.8e-34 148.3 301 32.6
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.5e-30 136.3 83 80.7
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.6e-14 84.3 57 75.4
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 3.5e-14 83.2 72 50.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 8.6e-13 78.6 253 24.5
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.6e-11 73.2 33 90.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.3e-10 70.5 56 66.1
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-10 69.3 32 87.5
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-10 68.9 33 84.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-09 67.4 33 81.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.4e-09 66.2 32 81.2
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 4.9e-08 62.8 46 56.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-07 60.8 31 80.6


User provided reference genes

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