Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.9e-244 849.0 513 100.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 8.7e-229 797.0 512 92.8
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 3.3e-228 795.0 512 88.3
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 4.3e-228 794.7 513 92.0
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.7e-228 794.3 512 92.6
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.3e-227 793.1 513 91.8
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.6e-227 792.7 512 93.4
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.2e-227 792.3 512 92.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 3.1e-226 788.5 511 88.1
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.1e-226 788.1 512 92.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 4.1e-226 788.1 512 92.2
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.4e-225 785.0 512 92.0
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 4.5e-225 784.6 512 90.8
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 92.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.7e-224 782.7 512 86.9
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.2e-224 782.3 512 91.6
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 2.2e-224 782.3 512 91.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.2e-224 782.3 511 88.5
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 3.8e-224 781.6 513 90.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 3.8e-224 781.6 511 92.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.5e-224 780.8 511 88.8
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 8.5e-224 780.4 513 92.0
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 8.5e-224 780.4 512 91.8
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.4e-223 779.6 512 91.2
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.4e-223 779.6 512 87.3
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.9e-223 779.2 512 91.6
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.9e-223 779.2 512 91.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 4.2e-223 778.1 509 86.2
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.2e-223 778.1 511 91.4
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 5.5e-223 777.7 512 91.2
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 5.5e-223 777.7 512 91.6
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-222 776.5 511 87.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.6e-222 776.2 512 91.0
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.6e-222 775.0 512 90.8
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 7.9e-222 773.9 512 89.5
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.0e-221 773.5 512 90.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.4e-221 773.1 512 90.6
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.4e-221 773.1 512 89.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.3e-221 772.3 511 91.0
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 6.7e-221 770.8 504 91.7
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.5e-220 769.6 512 88.5
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 2.0e-220 769.2 509 91.2
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 3.3e-220 768.5 513 90.4
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 7.4e-220 767.3 512 88.3
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.3e-219 766.5 512 88.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.7e-219 766.1 512 90.8
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.7e-219 766.1 513 91.6
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 2.8e-219 765.4 512 89.1
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.8e-219 765.4 512 88.1
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.1e-218 763.5 511 89.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 2.4e-218 762.3 512 90.4
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 3.1e-218 761.9 512 90.8
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 5.3e-218 761.1 504 91.1
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 5.3e-218 761.1 513 84.4
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.5e-217 759.6 512 83.6
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 2.0e-217 759.2 511 87.9
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.4e-217 758.4 513 87.5
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 3.4e-217 758.4 511 88.5
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 3.4e-217 758.4 511 89.4
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 7.7e-217 757.3 512 88.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.0e-216 756.9 527 79.1
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.3e-216 756.5 512 88.7
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 5.0e-216 754.6 517 87.0
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-215 753.4 504 89.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.9e-215 752.7 512 89.5
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.5e-215 752.3 504 88.1
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.5e-215 752.3 512 84.8
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 4.2e-215 751.5 513 83.2
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 5.5e-215 751.1 513 85.6
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 7.2e-215 750.7 504 90.1
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 9.4e-215 750.4 511 89.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.6e-214 748.4 512 86.9
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 7.9e-214 747.3 512 88.3
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.0e-213 746.9 512 88.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.0e-213 745.3 536 81.5
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 3.9e-213 745.0 513 81.9
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.1e-212 743.4 512 83.6
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.1e-212 743.4 512 83.6
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.5e-212 743.0 513 85.6
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.5e-212 743.0 510 83.3
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.3e-211 740.0 511 85.5
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-211 740.0 511 85.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.8e-211 738.8 513 85.2
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.4e-210 735.7 512 88.1
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.6e-209 732.3 500 86.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.3e-208 729.9 540 79.4
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 5.0e-208 728.0 507 86.6
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 3.2e-207 725.3 512 84.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.7e-206 722.2 512 76.8
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.8e-205 719.5 512 82.2
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.3e-204 715.3 508 87.0
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.3e-203 713.4 520 82.9
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 3.7e-203 711.8 513 85.4
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.3e-203 711.1 485 88.0
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.2e-200 702.6 512 80.5
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.7e-198 694.9 512 81.6
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.0e-197 693.7 533 79.7
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.7e-195 686.4 555 76.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.2e-195 686.0 512 73.8
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 4.8e-195 684.9 550 71.6
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 5.4e-194 681.4 523 82.0
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 3.5e-193 678.7 512 80.1
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.9e-192 675.6 484 85.1
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.8e-192 675.2 462 91.3
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.9e-191 672.9 513 73.3
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.8e-189 666.4 466 88.4
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.9e-183 646.4 512 81.4
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.2e-179 632.9 435 87.1
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 6.4e-179 631.3 430 91.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.9e-175 619.8 428 88.6
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.6e-159 565.1 513 70.8
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 5.6e-159 565.1 404 88.1
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.2e-153 547.4 512 67.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.6e-137 493.8 267 89.9
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 6.9e-133 478.4 252 94.8
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.5e-123 445.3 322 83.9
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 7.9e-121 438.3 311 80.1
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 3.5e-113 412.9 383 60.3
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.3e-104 383.6 208 93.8
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 5.1e-104 382.5 208 93.3
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 3.2e-90 336.7 365 72.6
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.7e-78 297.7 257 80.2
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.7e-76 290.4 523 49.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 4.7e-65 253.1 129 89.9
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.2e-61 240.4 129 96.1
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 4.6e-60 236.5 528 34.3
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.0e-43 182.2 99 83.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-42 178.7 111 79.3
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 3.6e-41 173.7 318 44.0
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.3e-38 165.2 80 95.0
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.4e-32 144.4 179 50.8
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 8.9e-32 142.5 78 91.0
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.0e-31 141.4 137 61.3
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 7.6e-31 139.4 295 32.2
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.2e-30 137.9 107 69.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 3.0e-27 127.5 70 87.1
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-25 121.3 69 84.1
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.8e-24 118.2 64 84.4
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.8e-24 118.2 64 84.4
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 1.2e-20 105.5 52 90.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 3.5e-20 104.0 56 82.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 6.7e-19 99.8 56 76.8
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 6.2e-17 93.2 74 60.8
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 6.2e-17 93.2 74 60.8
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.1e-17 92.8 48 95.8
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.1e-17 92.8 128 42.2
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 3.1e-16 90.9 46 82.6
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 5.8e-15 86.7 46 78.3
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 3.0e-11 74.3 105 42.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 6.7e-11 73.2 36 86.1
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.3e-10 70.9 134 70.9
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 4.0e-08 63.9 62 58.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.0e-06 59.3 29 82.8
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.3e-06 58.9 35 74.3


User provided reference genes

Program Settings